PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6NG274900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bZIP | ||||||||
Protein Properties | Length: 353aa MW: 37093.1 Da PI: 8.9946 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 40.1 | 7.8e-13 | 274 | 326 | 5 | 57 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L++ +L+k+ ee+ ++ + Pavir.6NG274900.1.p 274 RRQRRMIKNRESAARSRARKQAYTMELEAEVQKLKELKAELQKKQEEMMEMQK 326 79****************************************99999998865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.0E-11 | 270 | 334 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.542 | 272 | 323 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 7.0E-11 | 274 | 326 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.8E-13 | 274 | 323 | No hit | No description |
CDD | cd14707 | 2.98E-26 | 274 | 328 | No hit | No description |
SuperFamily | SSF57959 | 2.11E-9 | 274 | 323 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 277 | 292 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MDLKDGERRG AAGPGPLSRQ GSIYSLTFDE FQSTLGGMGG GLGKDFGSMN MDELLRSIWT 60 AEESQAMASA SAAAGAPGED GAALQRQGSL TLPRTLSVKT VDEVWRDFVR EGPPPGTAAG 120 AEPQPSRQPT LGEMTLEEFL VRAGVVRDNP AAAAMAAAVP AQPVAPRPIQ AVSNGASIFF 180 GNFGAANDTG AGAMGFAPVG IGDQGMGNGL MPGVAGMASA AVTVSPVDTS VAQLDSVGKG 240 NGDLSSPMAP VPYPFEGVIR GRRSGAGVEK VVERRQRRMI KNRESAARSR ARKQAYTMEL 300 EAEVQKLKEL KAELQKKQEE MMEMQKNQAL EVVSNPYAQK KRCLRRTLTG PW* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.22531 | 0.0 | leaf| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, leaves and embryos. {ECO:0000269|PubMed:10611387}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that mediates abscisic acid (ABA) signaling. Binds specifically to the ABA-responsive element (ABRE) of the EMP1 and RAB16A gene promoters. {ECO:0000269|PubMed:10611387}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6NG274900.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA). {ECO:0000269|PubMed:10611387}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT039652 | 0.0 | BT039652.1 Zea mays full-length cDNA clone ZM_BFc0037E11 mRNA, complete cds. | |||
GenBank | EU964768 | 0.0 | EU964768.1 Zea mays clone 281458 bZIP transcription factor ABI5 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025821117.1 | 0.0 | bZIP transcription factor TRAB1-like isoform X1 | ||||
Swissprot | Q6ZDF3 | 1e-152 | TRAB1_ORYSJ; bZIP transcription factor TRAB1 | ||||
TrEMBL | A0A2S3I376 | 0.0 | A0A2S3I376_9POAL; Uncharacterized protein | ||||
STRING | GRMZM2G157722_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP706 | 38 | 147 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41070.3 | 2e-30 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6NG274900.1.p |
Publications ? help Back to Top | |||
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