PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6NG274300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 258aa MW: 27621 Da PI: 7.5016 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.5 | 1.2e-08 | 177 | 217 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ a++L +A++Y+k L Pavir.6NG274300.1.p 177 ARMRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 217 699*****************87.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.085 | 168 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-12 | 173 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.27E-14 | 173 | 229 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-13 | 174 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.6E-6 | 177 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.73E-6 | 191 | 222 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MDFDMLNSHP EAQLELMNAM LQLEQLTAFP DHHGAMMMVP STPPPSPPCM QQQAHHHFSS 60 SVPHHMSVGG AANGRATYHD HHQYYSSSAV TSHASCNGSA RSEYAAHQDY PAAAGGGGGG 120 GGNGGMDDGA TAVGSSAMRE MIFRVAALQP VNIDPEMVRP PKRRNVRIST DPQSVAARMR 180 RERISERIRI LQRLVPGGTK MDTASMLDEA IHYVKFLKTQ VQSLERAAAA SGRRPAPPAA 240 DDDGAAAPYP GRFSGQW* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 158 | 163 | RPPKRR |
2 | 177 | 182 | RMRRER |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6NG274300.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ726973 | 1e-155 | KJ726973.1 Zea mays clone pUT3674 bHLH transcription factor (bHLH113) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025821983.1 | 1e-132 | transcription factor HEC2-like | ||||
TrEMBL | A0A2S3I359 | 1e-130 | A0A2S3I359_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Fb01689.1.p | 1e-152 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3103 | 36 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67060.1 | 5e-38 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6NG274300.1.p |