PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG267300.5.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 339aa    MW: 36808.6 Da    PI: 8.0887
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG267300.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.97.8e-1857106255
                          HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          r +h++ E+rRR++iN++f+ Lre+lP++    ++K +Ka+ L +++eYI+ Lq
  Pavir.6NG267300.5.p  57 RSKHSATEQRRRSKINDRFQILREILPQN----DQKRDKASFLLEVIEYIRFLQ 106
                          889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.1E-2454129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.88855105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-1955131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.87E-1557110No hitNo description
PfamPF000102.5E-1557106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-1361111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MDAGSRSSGG AGFDDDDGLA ARREVSSTLK ELSVRVETKG GSCSGSAGTD QLPNTPRSKH  60
SATEQRRRSK INDRFQILRE ILPQNDQKRD KASFLLEVIE YIRFLQEKVQ KYEVSHPEWN  120
QENAKLMPWS NIYFRSSWKN SQNKDEINGD MASDPSQLIK NGSSPRFPFA AKPEDHNNAG  180
AFETASGAQE QAEPKGCVPF KPAETPGKIT NTVASQQPAQ LTNSSPSDGC AAPNGMLSNP  240
ELAIDEGTIS LSSQYSQGLL TTLNLALQNS GIDLSQASIS VQINLGKRAI KRSAPGSNST  300
SKDLINQASR DQEIGHQLRS GDAAREHSQA IKRHKSDR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.14641e-101root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG267300.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822755.10.0transcription factor BIM2-like isoform X2
TrEMBLA0A2T7D8X50.0A0A2T7D8X5_9POAL; Uncharacterized protein
TrEMBLA0A3L6RH250.0A0A3L6RH25_PANMI; Transcription factor BIM1-like
STRINGPavir.Fb01833.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.13e-57BES1-interacting Myc-like protein 2