PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6NG267300.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 417aa MW: 45153.1 Da PI: 8.8726 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 55.5 | 1e-17 | 135 | 184 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lre+lP++ ++K +Ka+ L +++eYI+ Lq Pavir.6NG267300.2.p 135 RSKHSATEQRRRSKINDRFQILREILPQN----DQKRDKASFLLEVIEYIRFLQ 184 889*************************9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 5.8E-24 | 132 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.888 | 133 | 183 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.89E-19 | 133 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.75E-16 | 135 | 188 | No hit | No description |
Pfam | PF00010 | 3.4E-15 | 135 | 184 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.5E-13 | 139 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MGLQGDKATH DFLTLYSAAK DSALPLLPES KPPPPPPAHQ GHPWSLPFAA RCVTVASARP 60 QPQQQQQRPP ERKAGGGFMD AGSRSSGGAG FDDDDGLAAR REVSSTLKEL SVRVETKGGS 120 CSGSAGTDQL PNTPRSKHSA TEQRRRSKIN DRFQILREIL PQNDQKRDKA SFLLEVIEYI 180 RFLQEKVQKY EVSHPEWNQE NAKLMPWSNI YFRSSWKNSQ NKDEINGDMA SDPSQLIKNG 240 SSPRFPFAAK PEDHNNAGAF ETASGAQEQA EPKGCVPFKP AETPGKITNT VASQQPAQLT 300 NSSPSDGCAA PNGMLSNPEL AIDEGTISLS SQYSQGLLTT LNLALQNSGI DLSQASISVQ 360 INLGKRAIKR SAPGSNSTSK DLINQASRDQ EIGHQLRSGD AAREHSQAIK RHKSDR* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.1464 | 1e-167 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6NG267300.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822755.1 | 0.0 | transcription factor BIM2-like isoform X2 | ||||
TrEMBL | A0A2T7D8X5 | 0.0 | A0A2T7D8X5_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Fb01833.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 4e-56 | BES1-interacting Myc-like protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6NG267300.2.p |