PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG267300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 492aa    MW: 53135 Da    PI: 9.1185
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG267300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.11.3e-17210259255
                          HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          r +h++ E+rRR++iN++f+ Lre+lP++    ++K +Ka+ L +++eYI+ Lq
  Pavir.6NG267300.1.p 210 RSKHSATEQRRRSKINDRFQILREILPQN----DQKRDKASFLLEVIEYIRFLQ 259
                          889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.107.5E-24207282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.59E-19208284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.888208258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.75E-16210263No hitNo description
PfamPF000104.2E-15210259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-13214264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MGLQGDKATH DFLTLYSAAK DSALPLLPES KPPPPPPAHQ GFFLKTHDFL QPLERSSSQS  60
PPPSRPAAEQ PLRQHALPGG IGTFSIGRAA AADQPGAAVK QEQPPFAVWG QPDPRGHPWS  120
LPFAARCVTV ASARPQPQQQ QQRPPERKAG GGFMDAGSRS SGGAGFDDDD GLAARREVSS  180
TLKELSVRVE TKGGSCSGSA GTDQLPNTPR SKHSATEQRR RSKINDRFQI LREILPQNDQ  240
KRDKASFLLE VIEYIRFLQE KVQKYEVSHP EWNQENAKLM PWSNIYFRSS WKNSQNKDEI  300
NGDMASDPSQ LIKNGSSPRF PFAAKPEDHN NAGAFETASG AQEQAEPKGC VPFKPAETPG  360
KITNTVASQQ PAQLTNSSPS DGCAAPNGML SNPELAIDEG TISLSSQYSQ GLLTTLNLAL  420
QNSGIDLSQA SISVQINLGK RAIKRSAPGS NSTSKDLINQ ASRDQEIGHQ LRSGDAAREH  480
SQAIKRHKSD R*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.14640.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG267300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822754.10.0transcription factor BIM1-like isoform X1
TrEMBLA0A2T7D8Q50.0A0A2T7D8Q5_9POAL; Uncharacterized protein
STRINGSi013622m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.18e-55BES1-interacting Myc-like protein 2