PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6NG262300.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 1015aa MW: 113429 Da PI: 9.6133 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23 | 1.8e-07 | 46 | 81 | 3 | 40 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W+ eE e+++ a +++G++ W++Ia + Rt ++ Pavir.6NG262300.4.p 46 QWSREELERFYGAYRKYGKD-WRKIAGAIR-DRTSDMV 81 6*****************99.********9.9998665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.62E-10 | 41 | 92 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0061 | 43 | 91 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 5.993 | 45 | 86 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-5 | 46 | 85 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.5E-6 | 46 | 86 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.29E-4 | 47 | 89 | No hit | No description |
Pfam | PF06584 | 3.8E-33 | 622 | 722 | IPR033471 | DIRP domain |
SMART | SM01135 | 1.2E-56 | 622 | 723 | IPR033471 | DIRP domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0016592 | Cellular Component | mediator complex | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1015 aa Download sequence Send to blast |
MASARKVRNA NKRFAKINDD WKTEDTASVP KSKVRKKKLS DMLGSQWSRE ELERFYGAYR 60 KYGKDWRKIA GAIRDRTSDM VEALYNMNKA YLSLPEGTAT AAGLIAMMTD HYNILDGSNS 120 DHESNDLPKT SRKPQKRGHA KFQSVSKTSD IRYPDQLQSQ PASSSYGCLS LLKKKRSEDL 180 FVGNRPRAVG KRTPRVPVAS MYHRDDRGAP NRQAKPDSNN GDDEGAHVAA LALAEVYQSG 240 GSPQVSQTPG RSGDHMFLSP IKSNDRKNVD SEMGSSKLHG FQLDADYPEA SLGSREAETG 300 DYTKGSSYLM TNKGSPSVKP QKKVKRSQKR RKKAARKTGD QYEYDREACS GTEEGHSGRK 360 AKEEPELETL GRKTAWPSST SNKRSRQLFF DDESSALDAL HTLADLSVNI LQPSSVVESE 420 SSAQIKDENK DNDSDGKPSM PAAVSVYEQK DNSKSIAKKL KRQSEIASTD MVTRKKAKHS 480 KDPHHDGSTS EVKQQGCTCG VKTEKKKRKS SMGKVLKDEK NILKDVVKTE VSAEEGKTSS 540 NKETTTQGEM TPQADLTSKV KSRRKLGIQK SLSQECKPTE GAGDSGSEKL SYSLSNIIDV 600 KDKLSHCLSS RLLRRWCMFE WFYSAIDYPW FAKSEFVEYL NHVKLGHVPR LTRVEWGVIR 660 SSLGKPRRLS KQFLREEREK LSQYRDSVRQ HYAELRSGIR EGLPTDLARP LAVGQRVIAC 720 HPRTRELHDG NVLTVDHNRC RVQFDRPELG VEFVMDIDCM PLHPLENFPE SLRQQNIVNE 780 YYSRLSEANE DQMKELGTGG LTGFTSNLNS ADATFHIPPG HPITTLMKQA KGDSIDSIAQ 840 AKATVNEVTA ATQQAMYNQP STLSQIQERE ADIRALAELS RALDKKEALL VELRHMNEEV 900 SGKQKDGDII RDLEHFRKQY AMVLVQLRDS NDQVAAALLS LRQRNTYHGN AVQSYPKSME 960 NGMAFAGASD PYNLFGYINP ESGSQVIEVI ETSKSRAKMM VNVAIQVCLP ELCT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 320 | 336 | QKKVKRSQKRRKKAARK |
2 | 323 | 329 | VKRSQKR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.9339 | 0.0 | callus| leaf| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6NG262300.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025820688.1 | 0.0 | protein ALWAYS EARLY 2-like | ||||
TrEMBL | A0A2T8IHJ0 | 0.0 | A0A2T8IHJ0_9POAL; Uncharacterized protein | ||||
STRING | Si025839m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21430.2 | 0.0 | DNA binding |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6NG262300.4.p |