PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.6NG262300.3.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

MYB_related

Protein Properties

Length: 1147aa MW: 127501 Da PI: 9.4864

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.6NG262300.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.8	2.1e-07	46	81	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W+ eE e+++ a +++G++ W++Ia + Rt ++ Pavir.6NG262300.3.p 46 QWSREELERFYGAYRKYGKD-WRKIAGAIR-DRTSDMV 81 6***************99.******9.9998665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.99E-10	41	92	IPR009057	Homeodomain-like
SMART	SM00717	0.0061	43	91	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	5.993	45	86	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	3.7E-5	46	85	IPR009057	Homeodomain-like
Pfam	PF00249	1.1E-5	46	86	IPR001005	SANT/Myb domain
CDD	cd00167	1.01E-4	47	89	No hit	No description
SMART	SM01135	1.2E-56	622	723	IPR033471	DIRP domain
Pfam	PF06584	4.4E-33	622	722	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1147 aa Download sequence Send to blast
MASARKVRNA NKRFAKINDD WKTEDTASVP KSKVRKKKLS DMLGSQWSRE ELERFYGAYR 60 KYGKDWRKIA GAIRDRTSDM VEALYNMNKA YLSLPEGTAT AAGLIAMMTD HYNILDGSNS 120 DHESNDLPKT SRKPQKRGHA KFQSVSKTSD IRYPDQLQSQ PASSSYGCLS LLKKKRSEDL 180 FVGNRPRAVG KRTPRVPVAS MYHRDDRGAP NRQAKPDSNN GDDEGAHVAA LALAEVYQSG 240 GSPQVSQTPG RSGDHMFLSP IKSNDRKNVD SEMGSSKLHG FQLDADYPEA SLGSREAETG 300 DYTKGSSYLM TNKGSPSVKP QKKVKRSQKR RKKAARKTGD QYEYDREACS GTEEGHSGRK 360 AKEEPELETL GRKTAWPSST SNKRSRQLFF DDESSALDAL HTLADLSVNI LQPSSVVESE 420 SSAQIKDENK DNDSDGKPSM PAAVSVYEQK DNSKSIAKKL KRQSEIASTD MVTRKKAKHS 480 KDPHHDGSTS EVKQQGCTCG VKTEKKKRKS SMGKVLKDEK NILKDVVKTE VSAEEGKTSS 540 NKETTTQGEM TPQADLTSKV KSRRKLGIQK SLSQECKPTE GAGDSGSEKL SYSLSNIIDV 600 KDKLSHCLSS RLLRRWCMFE WFYSAIDYPW FAKSEFVEYL NHVKLGHVPR LTRVEWGVIR 660 SSLGKPRRLS KQFLREEREK LSQYRDSVRQ HYAELRSGIR EGLPTDLARP LAVGQRVIAC 720 HPRTRELHDG NVLTVDHNRC RVQFDRPELG VEFVMDIDCM PLHPLENFPE SLRQQNIVNE 780 YYSRLSEANE DQMKELGTGG LTGFTSNLNS ADATFHIPPG HPITTLMKQA KAKATVNEVT 840 AATQQAMYNQ PSTLSQIQER EADIRALAEL SRALDKKEAL LVELRHMNEE VSGKQKDGDI 900 IRDLEHFRKQ YAMVLVQLRD SNDQVAAALL SLRQRNTYHG NAVQSYPKSM ENGMAFAGAS 960 DPYNLFGYIN PESGSQVIEV IETSKSRAKM MVNVAIQAMC KVSEGDNVFA KIGEALDNLN 1020 SRGTGSGSSI LGIRRIPPDS GQSNALHQDN GTPAPPINSN SRLPNGCDSD GQFPTELISS 1080 CVAMMLMIKN CTDKQYHPAE VAHILDSALS GLQPRSSQNI PIFREIEMCM GIIKNQMLAL 1140 IPTPSG*

Sequence ? help Back to Top

Protein Sequence Length: 1147 aa Download sequence Send to blast

MASARKVRNA NKRFAKINDD WKTEDTASVP KSKVRKKKLS DMLGSQWSRE ELERFYGAYR  60
KYGKDWRKIA GAIRDRTSDM VEALYNMNKA YLSLPEGTAT AAGLIAMMTD HYNILDGSNS  120
DHESNDLPKT SRKPQKRGHA KFQSVSKTSD IRYPDQLQSQ PASSSYGCLS LLKKKRSEDL  180
FVGNRPRAVG KRTPRVPVAS MYHRDDRGAP NRQAKPDSNN GDDEGAHVAA LALAEVYQSG  240
GSPQVSQTPG RSGDHMFLSP IKSNDRKNVD SEMGSSKLHG FQLDADYPEA SLGSREAETG  300
DYTKGSSYLM TNKGSPSVKP QKKVKRSQKR RKKAARKTGD QYEYDREACS GTEEGHSGRK  360
AKEEPELETL GRKTAWPSST SNKRSRQLFF DDESSALDAL HTLADLSVNI LQPSSVVESE  420
SSAQIKDENK DNDSDGKPSM PAAVSVYEQK DNSKSIAKKL KRQSEIASTD MVTRKKAKHS  480
KDPHHDGSTS EVKQQGCTCG VKTEKKKRKS SMGKVLKDEK NILKDVVKTE VSAEEGKTSS  540
NKETTTQGEM TPQADLTSKV KSRRKLGIQK SLSQECKPTE GAGDSGSEKL SYSLSNIIDV  600
KDKLSHCLSS RLLRRWCMFE WFYSAIDYPW FAKSEFVEYL NHVKLGHVPR LTRVEWGVIR  660
SSLGKPRRLS KQFLREEREK LSQYRDSVRQ HYAELRSGIR EGLPTDLARP LAVGQRVIAC  720
HPRTRELHDG NVLTVDHNRC RVQFDRPELG VEFVMDIDCM PLHPLENFPE SLRQQNIVNE  780
YYSRLSEANE DQMKELGTGG LTGFTSNLNS ADATFHIPPG HPITTLMKQA KAKATVNEVT  840
AATQQAMYNQ PSTLSQIQER EADIRALAEL SRALDKKEAL LVELRHMNEE VSGKQKDGDI  900
IRDLEHFRKQ YAMVLVQLRD SNDQVAAALL SLRQRNTYHG NAVQSYPKSM ENGMAFAGAS  960
DPYNLFGYIN PESGSQVIEV IETSKSRAKM MVNVAIQAMC KVSEGDNVFA KIGEALDNLN  1020
SRGTGSGSSI LGIRRIPPDS GQSNALHQDN GTPAPPINSN SRLPNGCDSD GQFPTELISS  1080
CVAMMLMIKN CTDKQYHPAE VAHILDSALS GLQPRSSQNI PIFREIEMCM GIIKNQMLAL  1140
IPTPSG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	320	336	QKKVKRSQKRRKKAARK
2	323	329	VKRSQKR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.9339	0.0	callus\| leaf\| root\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.6NG262300.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025820688.1	0.0	protein ALWAYS EARLY 2-like
TrEMBL	A0A2T7D955	0.0	A0A2T7D955_9POAL; Uncharacterized protein
STRING	Si025839m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Link Out ? help Back to Top
Phytozome	Pavir.6NG262300.3.p