PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6NG262300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 1156aa MW: 128387 Da PI: 9.3997 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.8 | 2.1e-07 | 46 | 81 | 3 | 40 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W+ eE e+++ a +++G++ W++Ia + Rt ++ Pavir.6NG262300.1.p 46 QWSREELERFYGAYRKYGKD-WRKIAGAIR-DRTSDMV 81 6*****************99.********9.9998665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.07E-10 | 41 | 92 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0061 | 43 | 91 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 5.993 | 45 | 86 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-5 | 46 | 85 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-5 | 46 | 86 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.02E-4 | 47 | 89 | No hit | No description |
SMART | SM01135 | 1.2E-56 | 622 | 723 | IPR033471 | DIRP domain |
Pfam | PF06584 | 4.5E-33 | 622 | 722 | IPR033471 | DIRP domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0016592 | Cellular Component | mediator complex | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1156 aa Download sequence Send to blast |
MASARKVRNA NKRFAKINDD WKTEDTASVP KSKVRKKKLS DMLGSQWSRE ELERFYGAYR 60 KYGKDWRKIA GAIRDRTSDM VEALYNMNKA YLSLPEGTAT AAGLIAMMTD HYNILDGSNS 120 DHESNDLPKT SRKPQKRGHA KFQSVSKTSD IRYPDQLQSQ PASSSYGCLS LLKKKRSEDL 180 FVGNRPRAVG KRTPRVPVAS MYHRDDRGAP NRQAKPDSNN GDDEGAHVAA LALAEVYQSG 240 GSPQVSQTPG RSGDHMFLSP IKSNDRKNVD SEMGSSKLHG FQLDADYPEA SLGSREAETG 300 DYTKGSSYLM TNKGSPSVKP QKKVKRSQKR RKKAARKTGD QYEYDREACS GTEEGHSGRK 360 AKEEPELETL GRKTAWPSST SNKRSRQLFF DDESSALDAL HTLADLSVNI LQPSSVVESE 420 SSAQIKDENK DNDSDGKPSM PAAVSVYEQK DNSKSIAKKL KRQSEIASTD MVTRKKAKHS 480 KDPHHDGSTS EVKQQGCTCG VKTEKKKRKS SMGKVLKDEK NILKDVVKTE VSAEEGKTSS 540 NKETTTQGEM TPQADLTSKV KSRRKLGIQK SLSQECKPTE GAGDSGSEKL SYSLSNIIDV 600 KDKLSHCLSS RLLRRWCMFE WFYSAIDYPW FAKSEFVEYL NHVKLGHVPR LTRVEWGVIR 660 SSLGKPRRLS KQFLREEREK LSQYRDSVRQ HYAELRSGIR EGLPTDLARP LAVGQRVIAC 720 HPRTRELHDG NVLTVDHNRC RVQFDRPELG VEFVMDIDCM PLHPLENFPE SLRQQNIVNE 780 YYSRLSEANE DQMKELGTGG LTGFTSNLNS ADATFHIPPG HPITTLMKQA KGDSIDSIAQ 840 AKATVNEVTA ATQQAMYNQP STLSQIQERE ADIRALAELS RALDKKEALL VELRHMNEEV 900 SGKQKDGDII RDLEHFRKQY AMVLVQLRDS NDQVAAALLS LRQRNTYHGN AVQSYPKSME 960 NGMAFAGASD PYNLFGYINP ESGSQVIEVI ETSKSRAKMM VNVAIQAMCK VSEGDNVFAK 1020 IGEALDNLNS RGTGSGSSIL GIRRIPPDSG QSNALHQDNG TPAPPINSNS RLPNGCDSDG 1080 QFPTELISSC VAMMLMIKNC TDKQYHPAEV AHILDSALSG LQPRSSQNIP IFREIEMCMG 1140 IIKNQMLALI PTPSG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 320 | 336 | QKKVKRSQKRRKKAARK |
2 | 323 | 329 | VKRSQKR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.9339 | 0.0 | callus| leaf| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6NG262300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025820688.1 | 0.0 | protein ALWAYS EARLY 2-like | ||||
TrEMBL | A0A2T8IHJ0 | 0.0 | A0A2T8IHJ0_9POAL; Uncharacterized protein | ||||
STRING | Si025839m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6230 | 23 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21430.2 | 0.0 | DNA binding |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6NG262300.1.p |