PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG256900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 262aa    MW: 27907.4 Da    PI: 8.5623
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG256900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.7e-171462148
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                         rg+W++eEde+l  +v+++G g +W + +++ g++R++k+c++rw++yl
  Pavir.6NG256900.1.p 14 RGPWSPEEDEQLRSYVRRHGIGgNWIALPQKAGLNRCGKSCRLRWLNYL 62
                         89******************999************************97 PP
2Myb_DNA-binding361.7e-1171111446
                          S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           T++Ed  ++ +    G++ W+ Ia++++ gRt++++k++w++
  Pavir.6NG256900.1.p  71 YTEQEDRVILSLYSSIGSR-WSIIASKLP-GRTDNDVKNYWNT 111
                          69*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.697966IPR017930Myb domain
SuperFamilySSF466894.6E-2812109IPR009057Homeodomain-like
SMARTSM007175.7E-121364IPR001005SANT/Myb domain
PfamPF002491.1E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-241569IPR009057Homeodomain-like
CDDcd001676.04E-101662No hitNo description
SMARTSM007173.0E-1167115IPR001005SANT/Myb domain
PROSITE profilePS5129415.16367117IPR017930Myb domain
PfamPF002492.7E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-2270116IPR009057Homeodomain-like
CDDcd001671.64E-871111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MGRAPCCDKG SVKRGPWSPE EDEQLRSYVR RHGIGGNWIA LPQKAGLNRC GKSCRLRWLN  60
YLRPDIKHGG YTEQEDRVIL SLYSSIGSRW SIIASKLPGR TDNDVKNYWN TKLKKKAVAA  120
ASNGAFASPA TSSVTSSSGD ARFAAYPPQP QAQQQQGLIR FDAPRSTELA PVPPVAQLGG  180
AAWASPAAAS GAVAALDDDV FLPDLVGGGG GVEQLFPYGD FYAGLQDRAL ELSACYFPNM  240
AEMWGAAASD AKPQGLCNTL T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG256900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794301e-170HF679430.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB24 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808022.11e-140transcription factor RAX2-like
TrEMBLA0A3L6T1M01e-148A0A3L6T1M0_PANMI; Transcription factor RAX2-like
STRINGPavir.J11789.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-69myb domain protein 36