PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6NG235200.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 249aa MW: 27016.5 Da PI: 7.8844 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 54.9 | 1.6e-17 | 90 | 136 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka+iL +++eY+ksLq Pavir.6NG235200.5.p 90 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASILDETIEYLKSLQ 136 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 9.46E-17 | 82 | 140 | No hit | No description |
SuperFamily | SSF47459 | 1.57E-20 | 84 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.482 | 86 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.8E-15 | 90 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-21 | 90 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-17 | 92 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MPAGVNRGED ASLQSEVPHG AGAGTSSSGG SGSNYGGSGL PSDSGHVQKG KGMCRDDSDS 60 RSEDAECEET EETKSLRRCG TKRRTRAAEV HNLSERRRRD RINEKMRALQ ELIPHCNKTD 120 KASILDETIE YLKSLQMQVQ IIGMTSGMAP MMFPGAHQFM SPMALGMNSA CITAAQGLSQ 180 MPRLPYMNLP LPNHIPLNSS PAMNPINSPS IANEMQNVHL MEASNHFLHP RWRANIGTSG 240 TRNPCLWT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 81 | 98 | KRRTRAAEVHNLSERRRR |
2 | 94 | 99 | ERRRRD |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.42024 | 0.0 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in the node portions of the stem. Expressed in the leaves and the basal part of shoots. {ECO:0000269|PubMed:22984180}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may act as negative regulator of phyB-dependent light signal transduction (PubMed:17485859). Transcription activator that acts as positive regulator of internode elongation. May function via regulation of cell wall-related genes. May play a role in a drought-associated growth-restriction mechanism in response to drought stress (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6NG235200.5.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by light in dark-grown etiolated seedlings (PubMed:17485859). Circadian oscillation under 12 h light/12 h dark cycle conditions, with peaks in the middle of the light period (PubMed:17485859, PubMed:22984180). Down-regulated by cold and drought stresses (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025793215.1 | 1e-137 | transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like | ||||
Refseq | XP_025793216.1 | 1e-137 | transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like | ||||
Refseq | XP_025793217.1 | 1e-137 | transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like | ||||
Swissprot | Q10CH5 | 1e-103 | PIL13_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13 | ||||
TrEMBL | A0A2T8I0D1 | 1e-136 | A0A2T8I0D1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J12143.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59060.4 | 2e-33 | phytochrome interacting factor 3-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6NG235200.5.p |
Publications ? help Back to Top | |||
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