PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG231300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 153aa    MW: 16142.2 Da    PI: 10.1905
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG231300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2681.7e-213383256
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                         + +GVr+++ +gr++AeIrdp     r +r++lg+f+t+eeAa+a++aa++kl+g+
  Pavir.6NG231300.1.p 33 RLRGVRRRP-WGRYAAEIRDP---A-RkARVWLGTFDTPEEAARAYDAAARKLRGP 83
                         679******.**********8...2.35**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576119No hitNo description
CDDcd000181.35E-193292No hitNo description
PfamPF008471.5E-153282IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-223391IPR016177DNA-binding domain
SMARTSM003802.2E-323396IPR001471AP2/ERF domain
PROSITE profilePS5103223.8023390IPR001471AP2/ERF domain
PRINTSPR003674.0E-103445IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-303591IPR001471AP2/ERF domain
PRINTSPR003674.0E-105672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MAPRRSPSPA GSSSSGGGCS AERAAAEQQQ QPRLRGVRRR PWGRYAAEIR DPARKARVWL  60
GTFDTPEEAA RAYDAAARKL RGPRAATNYP AAADDSPCLF LDPAPTKTVV RQFLPPLKGA  120
DQERSCGYPG AAAASVGLGL DLNLPPPAEM VM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-2030901172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.279335e-93root
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG231300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9490138e-73EU949013.1 Zea mays clone 393795 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821653.12e-44ethylene-responsive transcription factor 8-like
SwissprotQ9FE679e-29ERF80_ARATH; Ethylene-responsive transcription factor 9
TrEMBLA0A3L6RFS66e-49A0A3L6RFS6_PANMI; Ethylene-responsive transcription factor 11-like
STRINGPavir.Fa01728.1.p4e-37(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144461025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.14e-14ERF domain protein 11
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]
  3. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]