PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6NG224700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | G2-like | ||||||||
Protein Properties | Length: 261aa MW: 28211.1 Da PI: 9.4209 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105.6 | 2.8e-33 | 45 | 99 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av+qLGG++kAtPk+i+++m+vkgLtl h+kSHLQkYRl Pavir.6NG224700.1.p 45 KPRLRWTADLHDRFVDAVAQLGGPDKATPKAIMRTMGVKGLTLFHLKSHLQKYRL 99 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.6E-32 | 42 | 100 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.202 | 42 | 102 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.8E-24 | 45 | 99 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 1.33E-16 | 45 | 100 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.7E-8 | 47 | 98 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.6E-21 | 140 | 185 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MFPGLIHHAG RPDAAAVEDA PRGGGGLGLH GHGGGPSVVL TADPKPRLRW TADLHDRFVD 60 AVAQLGGPDK ATPKAIMRTM GVKGLTLFHL KSHLQKYRLG SQSGKELTEQ SKDASYLMEA 120 QSGTNLSPRG STADVKESQE LKEAMRAQME VQRRLHEQVE VQKHMQIRME ANQKYIDTIL 180 DKAFKIVSEQ LSGFSISDQD LPDLASAGAM FSSTDPLGPS VFHQLSVSSV CLHSPVGSKA 240 LPHVTIDISQ KPPELKRKSR * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-17 | 45 | 98 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-17 | 45 | 98 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-17 | 45 | 98 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-17 | 45 | 98 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.1086 | 0.0 | callus| leaf| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6NG224700.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT039053 | 0.0 | BT039053.1 Zea mays full-length cDNA clone ZM_BFb0367F20 mRNA, complete cds. | |||
GenBank | JX469981 | 0.0 | JX469981.1 Zea mays subsp. mays clone UT3341 G2-like transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025821023.1 | 1e-157 | protein PHR1-LIKE 2-like | ||||
Swissprot | Q94A57 | 1e-68 | PHL2_ARATH; Protein PHR1-LIKE 2 | ||||
TrEMBL | A0A2T8IGC6 | 1e-156 | A0A2T8IGC6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Fb00789.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3427 | 38 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24120.1 | 4e-69 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6NG224700.1.p |
Publications ? help Back to Top | |||
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