PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG176900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 639aa    MW: 69530.6 Da    PI: 8.3373
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG176900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.73.2e-30321377259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           Dg+nWrKYGqK+vk+se++rsYYrCts+gC +kkkve++  d++vvei+Y+g Hnhe
  Pavir.6NG176900.1.p 321 ADGFNWRKYGQKQVKSSENSRSYYRCTSSGCLAKKKVEHCP-DGRVVEIIYRGAHNHE 377
                          7****************************************.***************8 PP
2WRKY100.31.2e-31488545259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dgy+WrKYGqK vkg+++prsYYrCt+ gCpv+k+ve++ +d + +++tYeg+Hnh+
  Pavir.6NG176900.1.p 488 SDGYRWRKYGQKIVKGNPNPRSYYRCTHGGCPVRKHVEKAPDDVNNIVVTYEGKHNHD 545
                          8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.515315379IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.0E-27317379IPR003657WRKY domain
SuperFamilySSF1182901.44E-23318379IPR003657WRKY domain
SMARTSM007741.3E-33320378IPR003657WRKY domain
PfamPF031061.0E-22322377IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.8E-31481547IPR003657WRKY domain
PROSITE profilePS5081132.948482547IPR003657WRKY domain
SuperFamilySSF1182902.75E-27482547IPR003657WRKY domain
SMARTSM007741.2E-35487546IPR003657WRKY domain
PfamPF031061.7E-25489545IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 639 aa     Download sequence    Send to blast
MARARANLLL PRFPRPLCLQ CQTIHLQCQT VDLLLHFLLS PWTVLLLPLW CGQYQSKSSP  60
SPHLSNSPSL RTLAFPRLPS MADGDPAPAP APNSEKPSAP AAAVEVEETR RPPPEPPGGP  120
VEEKRQSQVE AMAAEVETRP PPEAPGAPPA ENREKEAEAE AKERKKVEKG MGNETMETKE  180
KREEKGKGEK QGKEAAKEKA EAKGKVKVHA VVKVEGTEKE IKPTRRPAGA SAETPILAVP  240
VVAVPCFIAP SGFAGQFAMT HQAALASVTA QAQMHLQSPT TSTCSEAPSS PFYITPRSIV  300
PLQQSPFSSE PKSPHLVNMV ADGFNWRKYG QKQVKSSENS RSYYRCTSSG CLAKKKVEHC  360
PDGRVVEIIY RGAHNHEPPP KTRFAKEKVT PISVPSGGET LRLVNTEILE SSTPTCKSDH  420
CAVTETCEQQ LFCSSDCEGD AGNKSEDEHP SAEPMPKRRV IETTAPNLTP VLRTVREQKI  480
IVQAGKMSDG YRWRKYGQKI VKGNPNPRSY YRCTHGGCPV RKHVEKAPDD VNNIVVTYEG  540
KHNHDEPFRS NSIPVSAISP PVATIEQPNT STTTSDGKPP TITQKDANGE SDKETTLEFG  600
GEKALESAQT LLSIKTNSDD RKNSVLKETS SAVPVQNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-253175471477Probable WRKY transcription factor 4
2lex_A4e-253175471477Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.183010.0callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG176900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820376.10.0probable WRKY transcription factor 32 isoform X1
TrEMBLA0A2S3I1Z40.0A0A2S3I1Z4_9POAL; Uncharacterized protein
STRINGSi013488m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58203455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.21e-66WRKY DNA-binding protein 4