PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG172600.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 587aa    MW: 66585.3 Da    PI: 6.0033
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG172600.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.82.5e-103460127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                         ++++ C++++++G C+yG++C F+H+p
  Pavir.6NG172600.3.p 34 PGEPDCSNYLKFGRCRYGSKCMFNHPP 60
                         5789*********************96 PP
2zf-CCCH361.2e-11112136226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          +t lC+++++ G+Ck+G++CkF+H+
  Pavir.6NG172600.3.p 112 GTGLCSYYMQKGICKFGSNCKFHHP 136
                          5789********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.3283361IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-53360IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-73560IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-53761IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-43958IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-7110137IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.206110138IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-6110137IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-9112136IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5113135IPR000571Zinc finger, CCCH-type
PfamPF030041.3E-5343441IPR004252Probable transposase, Ptta/En/Spm, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MDSKDDGQVP KPTEALWHAA AGEEPELVVH SQRPGEPDCS NYLKFGRCRY GSKCMFNHPP  60
KPWAGQWRFE MNCRFNHPSR KQVYFPAGAC KCNHHEIEEV RLNSLGLPLR TGTGLCSYYM  120
QKGICKFGSN CKFHHPNRSE SEQEKLNADS QGSSQQNFYS ILGDIIKPDS DLSLRHAPPP  180
LDLPVPSYLL QQSSKGKEDK SFSLTQPRQV YSCPEQSGYQ QLADSHFEPA KQVRYTRDQL  240
LQQRETQQLV DVSKDILELK QCIVMELHGE DYSWPNNDSN VHTLSYHQYD LADRRERHPR  300
STAQIPEVAS EEKYWDNIDE EKGSYGTSGK QEQFCKHDQL GCFEFDSKPQ DKCIKNKLNH  360
EKVQFQQRTG SQCYIAKTYV VKQDKYKDTE PTAIDLFKET HCSSKIGFTE SVKKAIDDME  420
AIVAEPEHDG QDVKSSTDAI SEVLPQSSKF LQNVGIMSSS KSSTRVGVSS KVQELEAQLE  480
TAKQEKAELW QEMDSLKLQA QESESTMAKQ SHEVERLKDI MKSQGQQSEA AMAKQLEQIE  540
SLKKTVQYCS GFLGQMITIA ASICSNDNHC CLNLLQSREE DSNVTD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.193640.0root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG172600.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0A9CJF82e-91A0A0A9CJF8_ARUDO; Uncharacterized protein
STRINGPavir.Fb00578.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.12e-20C3H family protein