PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG166300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family AP2
Protein Properties Length: 362aa    MW: 39405.7 Da    PI: 8.274
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG166300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.5e-173483155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                         s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Pavir.6NG166300.1.p 34 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDQAAIKFRG 83
                         78*******************......55************************997 PP
2AP242.12.1e-13126176155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+++GV+++k  g+W+A+I         +k+++lg ++t+ eAa+a+++a+ k +g
  Pavir.6NG166300.1.p 126 SRFRGVTQHK-CGKWEARIGQlM----GKKYVYLGLYDTEMEAAQAYDKAAIKCYG 176
                          789*******.7******77733....25**********77**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-163492IPR016177DNA-binding domain
PfamPF008471.5E-93483IPR001471AP2/ERF domain
PROSITE profilePS5103217.6623591IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-173591IPR001471AP2/ERF domain
SMARTSM003803.2E-323597IPR001471AP2/ERF domain
CDDcd000182.83E-123593No hitNo description
SuperFamilySSF541712.42E-17126184IPR016177DNA-binding domain
CDDcd000189.69E-25126186No hitNo description
PfamPF008473.8E-9126176IPR001471AP2/ERF domain
PROSITE profilePS5103215.843127184IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-17127184IPR001471AP2/ERF domain
SMARTSM003801.1E-34127190IPR001471AP2/ERF domain
PRINTSPR003672.8E-6128139IPR001471AP2/ERF domain
PRINTSPR003672.8E-6166186IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
ATEQCHVAAA ASAADQWARS ASRKSRRGPR SRSSQYRGVT FYRRTGRWES HIWDCGKQVY  60
LGGFDTAHAA ARAYDQAAIK FRGVNADINF TLSDYKDEIK KMKNFSKEEF VQVLRRQGAG  120
FVRGSSRFRG VTQHKCGKWE ARIGQLMGKK YVYLGLYDTE MEAAQAYDKA AIKCYGKEAV  180
TNFEPQTYDE ELQVQSWDGE LDLELSLGCA GSDLSTVAVE ACSSAPSRQR TMTLTLDLPE  240
DDEETGAGYP HGSIRTMPSP SPGTFRLLPL ADDHAHHPGA GGRDDTAHML QMGQVGSSGG  300
AAAAHMRWPN GGNNWAPPYA TARADDDDGD AAAAASSGFP PGQLGRRCRR QQPLAASRPS  360
R*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG166300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0403460.0BT040346.1 Zea mays full-length cDNA clone ZM_BFc0084O08 mRNA, complete cds.
GenBankKJ7269410.0KJ726941.1 Zea mays clone pUT3487 AP2-EREBP transcription factor (EREB55) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810716.10.0AP2-like ethylene-responsive transcription factor TOE3 isoform X1
SwissprotA0A0N7KMH01e-142AP24_ORYSJ; APETALA2-like protein 4
TrEMBLA0A3L6RYR20.0A0A3L6RYR2_PANMI; Uncharacterized protein
STRINGPavir.J27340.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118213439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.23e-85AP2 family protein
Publications ? help Back to Top
  1. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  2. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]