PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG165500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CPP
Protein Properties Length: 387aa    MW: 42537.5 Da    PI: 8.202
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG165500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR41.82.1e-132361342
                  TCR  3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42
                          k+C+C++skClk+YC Cfa g++C++ C+C++C+N++++
  Pavir.6NG165500.1.p 23 IKNCKCRNSKCLKLYCGCFATGRYCKD-CNCTNCSNNSSH 61
                         689************************.********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011145.3E-112161IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163419.5622140IPR005172CRC domain
PfamPF036387.6E-102458IPR005172CRC domain
SMARTSM011140.26102129IPR033467Tesmin/TSO1-like CXC domain
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MLNSQNLWTE TLSGSKYKTP ASIKNCKCRN SKCLKLYCGC FATGRYCKDC NCTNCSNNSS  60
HENAINAVLE RRTAVFMPNA GSMSCAMQSS EGKEADDPLL GKHTRGCTCR KSECLKKYCG  120
WKAIRCIARK HAVFVQNKQN YALNGIPGPS SVLPHTTKND SVISMAASGI LHPIRNNGSS  180
QTLLSFPTSL DDDKGLVSER NTNGHSELGP HEVTYRSVLA DVVQVEDVNE LCKLLILASR  240
QAAEAFLGIN TSTEKLDRAE SCLSSTNSDR EAVHKELDIR ACLPESSSYE RSGPVSPGSQ  300
VLLCNELDTV SQLSRAEDAI HSTTTQNLPD IFIEQKKCVL TNFRDYLCKL AYCGRVEALC  360
ILFYIFPSLR SFQKNLIRAK GFLAAW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG165500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235073.13e-99protein tesmin/TSO1-like CXC 7 isoform X1
RefseqXP_014755713.13e-99protein tesmin/TSO1-like CXC 7 isoform X1
TrEMBLA0A2T8IGM21e-149A0A2T8IGM2_9POAL; Uncharacterized protein
STRINGPavir.J06198.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138462025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.16e-32Tesmin/TSO1-like CXC domain-containing protein