PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6NG157500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | Nin-like | ||||||||
Protein Properties | Length: 133aa MW: 15341.3 Da PI: 5.6837 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 52.7 | 8.5e-17 | 93 | 131 | 2 | 40 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyG 40 +k+ ++e +s+yFs+pik+AA+eL+v+lTvLKr+CR +G Pavir.6NG157500.1.p 93 KKRSTFELVSRYFSMPIKQAARELDVGLTVLKRRCRALG 131 677799*******************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 10.512 | 80 | 133 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 5.6E-12 | 97 | 131 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
MEELRFNEKG YHYYHGLKLH KDEGYFQLQD FSADYLLGEE THFCAISCPE SSFSQEELVC 60 LSEVDFASFW ALVEEEDARR KSEEGPRSGP GKKKRSTFEL VSRYFSMPIK QAARELDVGL 120 TVLKRRCRAL GAS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 78 | 94 | RRKSEEGPRSGPGKKKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6NG157500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822796.1 | 4e-67 | protein RKD1 | ||||
TrEMBL | A0A3L6RT05 | 3e-71 | A0A3L6RT05_PANMI; Protein RKD3-like | ||||
STRING | Pavir.J17077.1.p | 5e-86 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4590 | 33 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74480.1 | 7e-11 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6NG157500.1.p |