PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG141000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 298aa    MW: 31687.8 Da    PI: 8.7272
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG141000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.9e-171461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd+ lv +v+++G+g+W++++   g+ R+ k+c++rw +yl
  Pavir.6NG141000.1.p 14 KGPWTPEEDLVLVSYVQEHGPGNWRAVPTNTGLMRCNKSCRLRWTNYL 61
                         79********************************************97 PP
2Myb_DNA-binding491.4e-1567112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg+++ +E++l++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Pavir.6NG141000.1.p  67 RGNFSVQEEKLIIHLQALLGNR-WAAIASYLP-DRTDNDIKNYWNTHL 112
                          89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-24564IPR009057Homeodomain-like
PROSITE profilePS5129417.516961IPR017930Myb domain
SuperFamilySSF466891.12E-3011108IPR009057Homeodomain-like
SMARTSM007172.1E-121363IPR001005SANT/Myb domain
PfamPF002497.4E-161461IPR001005SANT/Myb domain
CDDcd001678.06E-111661No hitNo description
PROSITE profilePS5129424.50962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.3E-2465116IPR009057Homeodomain-like
SMARTSM007172.8E-1666114IPR001005SANT/Myb domain
PfamPF002496.5E-1567112IPR001005SANT/Myb domain
CDDcd001674.97E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MGRPPCCEKT GVKKGPWTPE EDLVLVSYVQ EHGPGNWRAV PTNTGLMRCN KSCRLRWTNY  60
LRPGIKRGNF SVQEEKLIIH LQALLGNRWA AIASYLPDRT DNDIKNYWNT HLKKKLGTMG  120
AGGAEAARTG RSAAPKGQWE RRLQTDIHTA RQALREALSL DPALPLPLPP AKTEPQQMLM  180
QLPQPAPAPP SQAAYASSAE NIARLLEGWM RPGTGSAGKT SSGSRSSASA VSGGEGASAS  240
HSGTTPTPEG STGTSKAEDA GPVPAFSMLE SWLLDDGMGH GDAGLIGVPL ADPCEFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-25141164105MYB PROTO-ONCOGENE PROTEIN
1mse_C4e-25141164105C-Myb DNA-Binding Domain
1msf_C4e-25141164105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed in flowers, leaves and weakly in seed pods. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG141000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0357491e-132BT035749.2 Zea mays full-length cDNA clone ZM_BFb0081I17 mRNA, complete cds.
GenBankKJ7278811e-132KJ727881.1 Zea mays clone pUT5974 MYB transcription factor (MYB83) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821217.11e-161myb-related protein 306-like isoform X1
SwissprotP813921e-101MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A3L6PM731e-175A0A3L6PM73_PANMI; Uncharacterized protein
STRINGPavir.Fa00895.1.p1e-174(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62470.27e-84myb domain protein 96
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]