PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.6NG140600.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 395aa MW: 44402 Da PI: 8.3459

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.6NG140600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.3	1.3e-52	29	156	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 l+pGfrFhPtdeelv++yLk+k+++k++++ e i+++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t++g+Wkatg+d+ Pavir.6NG140600.1.p 29 LMPGFRFHPTDEELVSFYLKRKIQQKPISI-ELIRQLDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSVRPNRVTAAGFWKATGTDR 117 689*************************.89***********9888999******************************* PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++s+ +++ +glkk+Lvfykgra +g ktdW+mhe+rl Pavir.6NG140600.1.p 118 PIYSSeGTKCIGLKKSLVFYKGRAARGMKTDWMMHEFRL 156 956667*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-57	28	187	IPR003441	NAC domain
PROSITE profile	PS51005	57.1	29	187	IPR003441	NAC domain
Pfam	PF02365	7.4E-26	31	156	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence Send to blast
MPSSYGIRIY THDMEARNDI NMDKSDEILM PGFRFHPTDE ELVSFYLKRK IQQKPISIEL 60 IRQLDIYKYD PWDLPKLAST GEKEWYFYCP RDRKYRNSVR PNRVTAAGFW KATGTDRPIY 120 SSEGTKCIGL KKSLVFYKGR AARGMKTDWM MHEFRLPSLN DPSLPKRPID KTIPLNDSWT 180 ICRIFKKTSS IAQRALSHTW GPPLPGATEA EMFSAFPSVQ ASEFALESSS CSLQVSPPPP 240 ANQLTSRHGL QGQQQQQNKV NNPSLDGSSC KLINFNCSQS LEPQNFPITF PFEVQTSQKT 300 TAAAPMFFST QPDHLGGFVV YSSADVNGGI GSRSQDSSTR KPGNGFSMNN SDWEAVGRIN 360 FPFDLGADSS EDWRVNIPWE SFLSPAAVQT ELPH*

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence Send to blast

MPSSYGIRIY THDMEARNDI NMDKSDEILM PGFRFHPTDE ELVSFYLKRK IQQKPISIEL  60
IRQLDIYKYD PWDLPKLAST GEKEWYFYCP RDRKYRNSVR PNRVTAAGFW KATGTDRPIY  120
SSEGTKCIGL KKSLVFYKGR AARGMKTDWM MHEFRLPSLN DPSLPKRPID KTIPLNDSWT  180
ICRIFKKTSS IAQRALSHTW GPPLPGATEA EMFSAFPSVQ ASEFALESSS CSLQVSPPPP  240
ANQLTSRHGL QGQQQQQNKV NNPSLDGSSC KLINFNCSQS LEPQNFPITF PFEVQTSQKT  300
TAAAPMFFST QPDHLGGFVV YSSADVNGGI GSRSQDSSTR KPGNGFSMNN SDWEAVGRIN  360
FPFDLGADSS EDWRVNIPWE SFLSPAAVQT ELPH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-52	29	190	17	168	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-52	29	190	17	168	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-52	29	190	17	168	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-52	29	190	17	168	NO APICAL MERISTEM PROTEIN
4dul_A	4e-52	29	190	17	168	NAC domain-containing protein 19
4dul_B	4e-52	29	190	17	168	NAC domain-containing protein 19
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: First expressed at globular stage onward in the COL progenitors after the first division of the hypophyseal cell. Later observed in these cells and their descendants, mostly in direct daughter cells. Also detected in the Epi/LRC stem cells and daughters, and is retained in maturing LRC layers. Present in elongated stem cells that are about to divide. {ECO:0000269\|PubMed:19081078}.
Uniprot	TISSUE SPECIFICITY: Expressed in root cap stem cells and their immediate daughters. {ECO:0000269\|PubMed:19081078}.

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.6NG140600.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025822140.1	0.0	protein FEZ-like
Swissprot	Q9ZVH0	8e-99	FEZ_ARATH; Protein FEZ
TrEMBL	A0A3L6PQ10	0.0	A0A3L6PQ10_PANMI; Protein FEZ-like
STRING	Pavir.J08304.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3366	38	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-101	NAC family protein

Link Out ? help Back to Top
Phytozome	Pavir.6NG140600.1.p

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]