PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6NG140000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | TCP | ||||||||
Protein Properties | Length: 237aa MW: 25404.5 Da PI: 5.6893 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 112.6 | 5.7e-35 | 82 | 172 | 3 | 81 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssasec..eaess 78 ++drhski T++g RdRR+Rls+ +a++fF+Lqd+LGfdk+skt++WLl+q+kpai+ l + +sss s c + +s Pavir.6NG140000.1.p 82 YRTDRHSKIRTAQGVRDRRMRLSVGVAREFFALQDRLGFDKASKTVNWLLTQSKPAIDRLHDAadppavvkgggeGSSS-STCcfK-DST 169 589************************************************************5555555555532222.344331.222 PP TCP 79 sss 81 +++ Pavir.6NG140000.1.p 170 EEA 172 222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 33.985 | 83 | 141 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 7.5E-33 | 83 | 161 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MPPTASMSAW DGYGAQIFPS DMMLRHQETL EAVLQQPATV VAPLRAPEAA AAEGELRLRD 60 AAPAGADGAG AHGAAAPRRR PYRTDRHSKI RTAQGVRDRR MRLSVGVARE FFALQDRLGF 120 DKASKTVNWL LTQSKPAIDR LHDAADPPAV VKGGGEGSSS STCCFKDSTE EAAEKGRSRV 180 GGRVGPAAAL MEEHGGGEVD WITSDAAAAV PPAQPPQPMD ELEYYYQYYL QLEEMI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-13 | 88 | 141 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 1e-13 | 88 | 141 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6NG140000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT063457 | 8e-80 | BT063457.1 Zea mays full-length cDNA clone ZM_BFc0065H12 mRNA, complete cds. | |||
GenBank | EU975636 | 8e-80 | EU975636.1 Zea mays clone 494952 teosinte branched1 protein mRNA, complete cds. | |||
GenBank | KJ726896 | 8e-80 | KJ726896.1 Zea mays clone pUT3439 TCP transcription factor (TCP15) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822665.1 | 1e-111 | transcription factor TB1-like | ||||
TrEMBL | A0A1E5VGN2 | 1e-114 | A0A1E5VGN2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Fb01590.1.p | 1e-171 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4052 | 31 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.2 | 2e-24 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6NG140000.1.p |