PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.6NG119800.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

LBD

Protein Properties

Length: 288aa MW: 31036.2 Da PI: 4.0458

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.6NG119800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	30.6	9.5e-10	1	42	58	99
DUF260 58 msslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 m +l+y++++ra+dPv G++++il+l++qle + ael ++ + Pavir.6NG119800.1.p 1 MGTLIYQSDMRAQDPVGGCYRLILTLERQLELETAELTAVLH 42 679*********************************998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	9.8E-7	1	39	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MGTLIYQSDM RAQDPVGGCY RLILTLERQL ELETAELTAV LHHLALCRQA AAAATAIPPP 60 QEGGMADLDV TPSNQPLLLN AEQEVVDALY ANHEPDAAAI LQSGHVHHHD HGDSPQDHGE 120 QQQQQLFDYF YYEATASDDA SSKPTIDINV DNMQQFDFDD ICAAEKVDLS TAGPEEIGQP 180 QHHLDVNCQI DHKDYEIKAA ALVDAFDMRQ ELQPPVDVNV AAVDVKPAAV DAGIRVDIKA 240 VDVNANLDVN VDLHEEDANN IAAGDGAAQI MAADSSHCRL GLGFSSF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.6NG119800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF057179	3e-98	EF057179.1 Panicum virgatum microsatellite PVSSR027 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025820222.1	1e-159	uncharacterized protein LOC112896465
TrEMBL	A0A2S3I2F9	1e-158	A0A2S3I2F9_9POAL; Uncharacterized protein
STRING	Pavir.Fb01201.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5228	34	61

Link Out ? help Back to Top
Phytozome	Pavir.6NG119800.1.p