PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG110800.5.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 321aa    MW: 33689 Da    PI: 11.158
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG110800.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like92.24.4e-29254304252
              G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 
                          pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+
  Pavir.6NG110800.5.p 254 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQR 304
                          9*************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.15E-13251304IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.0E-26252304IPR009057Homeodomain-like
TIGRFAMsTIGR015573.3E-21254304IPR006447Myb domain, plants
PfamPF002498.1E-6255303IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MEARAASAPD LSLHISLPSS AASPPPAPGR LGAAVGGRGA QPAAGGDPWR RLNGSTASTE  60
LSLSPPPRQE PAGDVLPWRL RPPAANYSSS SSPSSAATAE AASFVPVTVP RLSLDAAAEA  120
ARARPINGVP VYSSPRAAGH PFLGAAGDYR QGHPKVGLYN PYHASSWPSS LRSTTTPPAV  180
APSASDPAAA FLSPSAYHRM LSGTGRLHLH GVLADTFRGY GGHHHRQQQQ HFGSLASARY  240
MPKFPASRRG MRAPRMRWTS SLHARFVHAV ELLGGHERAT PKSVLELMDV KDLTLAHVKS  300
HLQRSMATTS CMQCGHPSFS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-14255304453Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-14255304453Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-14255304453Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-14255304453Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-14255304453Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-14255304453Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-14255304453Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-14255304453Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.178220.0root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves and flowers. {ECO:0000269|PubMed:18594992}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates abaxial identity during leaf development. {ECO:0000269|PubMed:18594992}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG110800.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9350031e-157EU935003.1 Zea mays cultivar B73 kanadi1 (kan1) mRNA, complete cds.
GenBankJX4699821e-157JX469982.1 Zea mays subsp. mays clone UT3342 G2-like transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820100.11e-140probable transcription factor RL9 isoform X2
SwissprotQ0J2352e-57ROLL9_ORYSJ; Probable transcription factor RL9
TrEMBLA0A3L6RKZ81e-150A0A3L6RKZ8_PANMI; Putative transcription factor RL9
STRINGPavir.Fb00812.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.14e-35G2-like family protein