PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG110800.4.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 413aa    MW: 43807.9 Da    PI: 12.064
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG110800.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.51.4e-28254303251
              G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                          pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ
  Pavir.6NG110800.4.p 254 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 303
                          9************************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.69E-13251304IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.4E-25252303IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-21254304IPR006447Myb domain, plants
PfamPF002491.3E-5255303IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MEARAASAPD LSLHISLPSS AASPPPAPGR LGAAVGGRGA QPAAGGDPWR RLNGSTASTE  60
LSLSPPPRQE PAGDVLPWRL RPPAANYSSS SSPSSAATAE AASFVPVTVP RLSLDAAAEA  120
ARARPINGVP VYSSPRAAGH PFLGAAGDYR QGHPKVGLYN PYHASSWPSS LRSTTTPPAV  180
APSASDPAAA FLSPSAYHRM LSGTGRLHLH GVLADTFRGY GGHHHRQQQQ HFGSLASARY  240
MPKFPASRRG MRAPRMRWTS SLHARFVHAV ELLGGHERAT PKSVLELMDV KDLTLAHVKS  300
HLQVQWTAAA AAAPATTTSL MPARLRQPAR MPARSRSPHT NPPPRRAQRA MPAAKLSAPR  360
LRILTAAGHA AALRQEINGH HQLHAMWTPI VQLRIWSPLV GQLACTRYPT MK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-14255308457Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-14255308457Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-14255308457Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-14255308457Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-14255308457Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-14255308457Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-14255308457Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-14255308457Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.178220.0root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves and flowers. {ECO:0000269|PubMed:18594992}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates abaxial identity during leaf development. {ECO:0000269|PubMed:18594992}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG110800.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9350031e-156EU935003.1 Zea mays cultivar B73 kanadi1 (kan1) mRNA, complete cds.
GenBankJX4699821e-156JX469982.1 Zea mays subsp. mays clone UT3342 G2-like transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820101.10.0probable transcription factor RL9 isoform X3
SwissprotQ0J2351e-57ROLL9_ORYSJ; Probable transcription factor RL9
TrEMBLA0A2T7D7E40.0A0A2T7D7E4_9POAL; Uncharacterized protein
STRINGPavir.Fb00812.1.p1e-166(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.11e-33G2-like family protein