PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG097100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YC
Protein Properties Length: 331aa    MW: 35403.6 Da    PI: 4.4925
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG097100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC146.27e-461692721101
                NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 
                          ql++ w+ q    e+atd+k h+lPlarikki+kadedvkmi+ e+Pvl++kace+fileltlrswlhae +krrtl++sd+a+a+   +
  Pavir.6NG097100.1.p 169 QLQALWTGQlveAEQATDLKVHNLPLARIKKIMKADEDVKMIAGEVPVLFAKACEMFILELTLRSWLHAEGAKRRTLQRSDVASAIIANE 258
                          799****9988889**************************************************************************** PP

                NF-YC  88 ifdflvdivprdel 101
                          +fdfl+d+ p++e+
  Pavir.6NG097100.1.p 259 MFDFLMDVSPTEEQ 272
                          **********9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.16E-27177263IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.6E-32184254IPR009072Histone-fold
PfamPF008081.2E-18191254IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MDQYSQEINN DDGATSGVTP GSYPLNTFLQ PAALESVPLL SATAAFLPVP ASQGAAAYPA  60
TILSSFSNQQ SSQTNAFEAA TNVAGGTPAA FALTPYNHQP EALASLPPSS SAGTTRLPSA  120
AGSSSSQVAG AGAAYQASIP VPLSSQHQAA LFQKFQQLQQ HQLQYQEQQL QALWTGQLVE  180
AEQATDLKVH NLPLARIKKI MKADEDVKMI AGEVPVLFAK ACEMFILELT LRSWLHAEGA  240
KRRTLQRSDV ASAIIANEMF DFLMDVSPTE EQNGNGVAPP QQTATMPPAT FPIPFPMYAN  300
QQPVTFMWPP TEYQQPQQRQ QQNSDGGQAE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B9e-40177268394NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241247RRTLQRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG097100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822248.11e-160nuclear transcription factor Y subunit C-2-like
TrEMBLA0A2T7D4J51e-159A0A2T7D4J5_9POAL; Uncharacterized protein
STRINGPavir.J34239.1.p1e-171(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP157031216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.22e-44nuclear factor Y, subunit C4