PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6NG084200.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 301aa MW: 31856.8 Da PI: 10.0751 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.1 | 4.2e-05 | 193 | 230 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +++eYI+ L Pavir.6NG084200.3.p 193 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIRFL 230 677888999*******998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.903 | 181 | 230 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-9 | 191 | 252 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.89E-6 | 191 | 234 | No hit | No description |
SuperFamily | SSF47459 | 6.8E-12 | 191 | 251 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0097 | 192 | 236 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MSEILMIIRD GSGFHGYMSS SRGDQVQLGL RSPSSSNNSL MLQDPHDPNH QFLSNLGLEL 60 LSSPTPTSPS GGFRSSSLLR SLTEPAAAAK PSPGFQQYQQ QTMNQAPSSI REALQFTNST 120 PFWNPSAGFA AEGTASGPPS GQSRPASLAA KSTLEGAGDS SSIITKKANT DPTPLKKART 180 GTPSSPLPTF KVRKEKLGDR ITALQQLVSP FGKTDTASVL HETIEYIRFL HQQVGSLSAP 240 YLKNRQQVPH LKVSRDGGEA AAAKGDLTGR GLCLVPISST FAVASETPVD FWSPFGAAFR 300 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6NG084200.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025821266.1 | 0.0 | transcription factor bHLH112-like isoform X1 | ||||
TrEMBL | A0A3L6PM30 | 0.0 | A0A3L6PM30_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Fb00501.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61660.3 | 6e-44 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6NG084200.3.p |