PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG078900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 273aa    MW: 28543.2 Da    PI: 11.3552
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG078900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-07214257243
                          SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                          g+W++ +d  l++a k+++++   +W+++a+ ++ g+t   c  r
  Pavir.6NG078900.1.p 214 GAWSAGDDRALLNALKEFPKDtamRWEKVAAAVP-GKTKAACMKR 257
                          79********************************.*******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.934208262IPR017877Myb-like domain
SMARTSM007179.4E-7212264IPR001005SANT/Myb domain
SuperFamilySSF466891.01E-9212261IPR009057Homeodomain-like
PfamPF002497.6E-7214257IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-6214262IPR009057Homeodomain-like
CDDcd001674.20E-7215262No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MEFVDPWDTQ SRARVVHSGA NSTSSPSSTA AGASPSLPHA VSCAAAAVAL LAAAYYLPPA  60
YQILASLLVW VASSLLLAPF APSSATGGDI SVGRGRLLPA EEASQEPRLR LRVGRRGWRR  120
EGGGRRRVDR PRAGAPPAAD GEAPGGGAQA VGEDRRGVRR PPHAGERHPR GEVGRRRGGR  180
GLVRAELRKR KPLDPRAEAA DAGDNAGGGE SADGAWSAGD DRALLNALKE FPKDTAMRWE  240
KVAAAVPGKT KAACMKRVTE LKRDFRSTKA AS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174190RRRGGRGLVRAELRKRK
2186191LRKRKP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.348981e-180root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG078900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821088.16e-88transcription factor MAMYB
TrEMBLA0A2S3I0D31e-86A0A2S3I0D3_9POAL; Uncharacterized protein
STRINGPavir.Fa01887.1.p6e-90(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103112731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.11e-23MYB_related family protein