PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6NG063900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | G2-like | ||||||||
Protein Properties | Length: 353aa MW: 36983.4 Da PI: 7.3822 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.6 | 2.4e-32 | 162 | 215 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+++AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Pavir.6NG063900.1.p 162 PRMRWTSTLHARFVHAVELLGGHDRATPKSVLELMDVKDLTLAHVKSHLQMYRT 215 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-29 | 159 | 216 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.96E-16 | 160 | 216 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.4E-24 | 162 | 215 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.8E-7 | 163 | 214 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MELFPSQPDL SLQIGLPTSA TAHDHHHHHA ANLSARFFAA AAGGGGNPAA MPPSLQLPMP 60 VPLPMPVQLP MPPSAAAAGA AGLYYHPDAA ATVLRPIRGV PLYQQPHTHA VPPTFPPHAA 120 AAAGPCFCEP CHVAAGAWRR AGCGGGARVA GFPPAKRAAR APRMRWTSTL HARFVHAVEL 180 LGGHDRATPK SVLELMDVKD LTLAHVKSHL QMYRTVKNTE RPATSSDQAD GFENGSAGEI 240 CDDNSLDLHG HGGGGGRLES AAAARHGRLA ACNDHGSSTG AHGALWNSSS REDWTGFPSE 300 SNTGSMHSLK EQMQSKSLEI LSDLNSCVSE TTSSTSELNL EFTLGRPQNR PN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 3e-16 | 163 | 217 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-16 | 163 | 217 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-16 | 163 | 217 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-16 | 163 | 217 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves and flowers. {ECO:0000269|PubMed:18594992}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates abaxial identity during leaf development. {ECO:0000269|PubMed:18594992}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6NG063900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU957008 | 0.0 | EU957008.1 Zea mays clone 1580405 KANADI-like transcription factor FEATHERED mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025821359.1 | 0.0 | probable transcription factor RL9 isoform X1 | ||||
Swissprot | Q0J235 | 5e-42 | ROLL9_ORYSJ; Probable transcription factor RL9 | ||||
TrEMBL | A0A3L6PS85 | 0.0 | A0A3L6PS85_PANMI; Putative transcription factor RL9 isoform X1 | ||||
STRING | GRMZM2G123308_P02 | 1e-168 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4721 | 36 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32240.1 | 3e-36 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6NG063900.1.p |