PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6NG062800.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | LSD | ||||||||
Protein Properties | Length: 145aa MW: 14921.5 Da PI: 7.9177 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 42.6 | 1e-13 | 27 | 51 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCr+lL+YP+GA+sV+Ca+C tV Pavir.6NG062800.2.p 27 CTGCRNLLMYPAGATSVCCAVCSTV 51 9**********************99 PP | |||||||
2 | zf-LSD1 | 46.8 | 4.8e-15 | 66 | 90 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV Pavir.6NG062800.2.p 66 CGGCHTLLMYIRGATSVQCSCCHTV 90 ************************9 PP | |||||||
3 | zf-LSD1 | 41.9 | 1.7e-13 | 105 | 129 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V Pavir.6NG062800.2.p 105 CGNCRMLLMYQYGARSVKCAVCNFV 129 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 6.2E-13 | 24 | 54 | IPR005735 | Zinc finger, LSD1-type |
SuperFamily | SSF48695 | 7.95E-5 | 27 | 126 | IPR011031 | Multihaem cytochrome |
Pfam | PF06943 | 7.8E-11 | 27 | 51 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 8.6E-15 | 63 | 92 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.3E-12 | 66 | 90 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 3.9E-12 | 102 | 132 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.0E-12 | 105 | 129 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009814 | Biological Process | defense response, incompatible interaction | ||||
GO:0034052 | Biological Process | positive regulation of plant-type hypersensitive response | ||||
GO:2000121 | Biological Process | regulation of removal of superoxide radicals |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
MPVPLAPYPT PPVPFTPPNG AQSQLVCTGC RNLLMYPAGA TSVCCAVCST VTAVPAPGTE 60 MAQLVCGGCH TLLMYIRGAT SVQCSCCHTV NLAMEGMNQV AHVNCGNCRM LLMYQYGARS 120 VKCAVCNFVT SVGASPGAEQ KPSS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.1694 | 0.0 | leaf| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Negative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6NG062800.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP091666 | 1e-144 | FP091666.1 Phyllostachys edulis cDNA clone: bphyst007l18, full insert sequence. | |||
GenBank | FP094210 | 1e-144 | FP094210.1 Phyllostachys edulis cDNA clone: bphylf003c20, full insert sequence. | |||
GenBank | FP097106 | 1e-144 | FP097106.1 Phyllostachys edulis cDNA clone: bphyst016n22, full insert sequence. | |||
GenBank | FP097837 | 1e-144 | FP097837.1 Phyllostachys edulis cDNA clone: bphylf033i22, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006847710.1 | 1e-85 | protein LSD1 isoform X1 | ||||
Refseq | XP_011624573.1 | 1e-85 | protein LSD1 isoform X1 | ||||
Swissprot | Q0J7V9 | 4e-85 | LSD1_ORYSJ; Protein LSD1 | ||||
TrEMBL | B5KLZ6 | 4e-87 | B5KLZ6_BAMOL; LOL1 | ||||
STRING | ERN09291 | 5e-85 | (Amborella trichopoda) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 5e-57 | lsd one like 1 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6NG062800.2.p |
Publications ? help Back to Top | |||
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