PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6NG062800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | LSD | ||||||||
Protein Properties | Length: 152aa MW: 15740.5 Da PI: 7.9177 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 42.5 | 1.1e-13 | 35 | 59 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCr+lL+YP+GA+sV+Ca+C tV Pavir.6NG062800.1.p 35 CTGCRNLLMYPAGATSVCCAVCSTV 59 9**********************99 PP | |||||||
2 | zf-LSD1 | 46.7 | 5.2e-15 | 74 | 98 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV Pavir.6NG062800.1.p 74 CGGCHTLLMYIRGATSVQCSCCHTV 98 ************************9 PP | |||||||
3 | zf-LSD1 | 41.8 | 1.8e-13 | 112 | 136 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V Pavir.6NG062800.1.p 112 CGNCRMLLMYQYGARSVKCAVCNFV 136 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.90.10.10 | 2.4E-4 | 23 | 133 | No hit | No description |
TIGRFAMs | TIGR01053 | 6.7E-13 | 32 | 62 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 8.4E-11 | 35 | 59 | IPR005735 | Zinc finger, LSD1-type |
SuperFamily | SSF48695 | 3.35E-5 | 35 | 133 | IPR011031 | Multihaem cytochrome |
TIGRFAMs | TIGR01053 | 9.3E-15 | 71 | 100 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.4E-12 | 74 | 98 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 4.2E-12 | 109 | 139 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.1E-12 | 112 | 136 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009814 | Biological Process | defense response, incompatible interaction | ||||
GO:0034052 | Biological Process | positive regulation of plant-type hypersensitive response | ||||
GO:2000121 | Biological Process | regulation of removal of superoxide radicals |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MPVPLAPYPT PPVPFTPPNV SFVLQFSGAQ SQLVCTGCRN LLMYPAGATS VCCAVCSTVT 60 AVPAPGTEMA QLVCGGCHTL LMYIRGATSV QCSCCHTVNL AMEVNQVAHV NCGNCRMLLM 120 YQYGARSVKC AVCNFVTSVG ASPGAEQKPS S* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.1694 | 0.0 | leaf| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Negative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6NG062800.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006847710.1 | 1e-84 | protein LSD1 isoform X1 | ||||
Refseq | XP_011624573.1 | 1e-84 | protein LSD1 isoform X1 | ||||
Swissprot | Q0J7V9 | 3e-84 | LSD1_ORYSJ; Protein LSD1 | ||||
TrEMBL | B5KLZ6 | 2e-86 | B5KLZ6_BAMOL; LOL1 | ||||
STRING | Pavir.J40729.1.p | 1e-104 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1347 | 38 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.1 | 1e-59 | lsd one like 1 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6NG062800.1.p |
Publications ? help Back to Top | |||
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