PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG060900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 683aa    MW: 75756.7 Da    PI: 4.5128
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG060900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.25.6e-5291421128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lp GfrFhPtdeel+ +yLk k++g+ +++ evi+e+d++k+ePwdLp k  +++++ ew+fF+++d+ky++g+r+nrat++gyWkatgk
  Pavir.6NG060900.1.p   9 LPLGFRFHPTDEELIRHYLKGKITGQINSEVEVIPEIDVCKCEPWDLPdKsLIRSDDPEWFFFAPKDRKYPNGSRSNRATEAGYWKATGK 98 
                          699************************9999****************96446677888******************************** PP

                  NAM  89 dkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d+ ++sk    k++ +g+kktLvf++grapkge+t W+mheyr 
  Pavir.6NG060900.1.p  99 DRIIKSKgdkrKQHIIGMKKTLVFHRGRAPKGERTGWIMHEYRT 142
                          ******987666666***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.1E-583163IPR003441NAC domain
PROSITE profilePS5100557.1729163IPR003441NAC domain
PfamPF023652.1E-2710141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MTVMELKALP LGFRFHPTDE ELIRHYLKGK ITGQINSEVE VIPEIDVCKC EPWDLPDKSL  60
IRSDDPEWFF FAPKDRKYPN GSRSNRATEA GYWKATGKDR IIKSKGDKRK QHIIGMKKTL  120
VFHRGRAPKG ERTGWIMHEY RTTEPEFESG EQGGYVLYRL FRKQEEKPER PSPDEVDRSG  180
YSPTPSRSSP DNIEVNEEAN TPLNRESPES GLHESPIELP NSVETNAMPM RRWLADRNDN  240
LVATAADVSH MMPINGHANV PEVDSSAGAS AQFVHPQNGN GGFNNFVPDI APNIPHGNAF  300
FSDFQQGAFG FDGNMNPPDA LDAFLNQTLV DPDEHSSTTS KVQYDSDIPT EFDNHGVAQG  360
EECWWANLDF LSDEPNPLNS QYENTPLLHY DTNDQDVLSV DSAADSLHDL FNNMEDSSAR  420
RAGMNIEYGL QGTGISLMPG ELQPSVQPNY LFTNQGTAQR RIRLQLPADL ESGESITRDE  480
SEDEVSCVVT PNYLNEAEEE STADKDVVSD GDEAESTGIV IRSRPAPSSS SESSLTQQGT  540
AVRRLRLQSH LMTGPCPSTD DTSSCIINEA ESHHKAEKSE IGEDASTNFA ETVDGILDRC  600
GDSEQKNMPE HVAETAVPEA KSVPRLRKAS EKSGKDAIKQ EDGLEPHVRA PAQKRGFQPY  660
MVWLVLSVPL LLLLCVGVYG WI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-46816419169NAC domain-containing protein 19
3swm_B1e-46816419169NAC domain-containing protein 19
3swm_C1e-46816419169NAC domain-containing protein 19
3swm_D1e-46816419169NAC domain-containing protein 19
3swp_A1e-46816419169NAC domain-containing protein 19
3swp_B1e-46816419169NAC domain-containing protein 19
3swp_C1e-46816419169NAC domain-containing protein 19
3swp_D1e-46816419169NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.8830.0callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG060900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820792.10.0protein NTM1-like 9
TrEMBLA0A3L6RM530.0A0A3L6RM53_PANMI; Protein NTM1-like 9
STRINGPavir.Fb00405.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51723859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.11e-74NAC 014