PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.6NG055400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 337aa MW: 35842.5 Da PI: 10.1861 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.4 | 3.8e-14 | 103 | 147 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + ++lG+g+W+ Ia+ + + Rt+ q+ s+ qky Pavir.6NG055400.1.p 103 PWTEEEHRTFLAGLEKLGKGDWRGIAKNFVTSRTPTQVASHAQKY 147 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.598 | 96 | 152 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.08E-17 | 97 | 152 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-18 | 99 | 151 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.5E-11 | 100 | 150 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.74E-10 | 103 | 148 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-12 | 103 | 146 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.6E-12 | 103 | 147 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 337 aa Download sequence Send to blast |
MPQDSRPAGM RLFGVTIAPV PPPAPEADPP DRDPSPNPPV AVREDVMRKC KSMGNLAALG 60 AAADGGGAGA DGGGAGDGYL SDGGLMQSSG KRRRAQERKK AVPWTEEEHR TFLAGLEKLG 120 KGDWRGIAKN FVTSRTPTQV ASHAQKYFLR QTNPNKKKRR SSLFDMMPGE LSPAPNCPIL 180 PPSMAKVHDV VAMTRQLQNS NLEGGSSSNT ANIAPQVGRD LPPVPSFWAT NMDSSFSKLN 240 RMEPLWRTPY PFRPIPRSPD GTSPSTPVVA NIASRVSKAN PTACTSTSLS PRSDTSSLPP 300 KADPPAEMKD LELTVAPPSQ QNMTNMSSQN AELAQA* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 155 | 159 | KKKRR |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pvr.34489 | 1e-76 | callus| root |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.6NG055400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HF679458 | 0.0 | HF679458.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB52 protein. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822192.1 | 0.0 | transcription factor MYBS3-like isoform X2 | ||||
TrEMBL | A0A2S3I051 | 0.0 | A0A2S3I051_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Fa01954.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5858 | 36 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G47390.1 | 4e-38 | MYB_related family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.6NG055400.1.p |