PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG051800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TCP
Protein Properties Length: 405aa    MW: 42015.6 Da    PI: 8.9038
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG051800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP116.82.8e-368519614116
                  TCP  14 kvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaa.kskksq 101
                          +v+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++  a+s +s as++ss+++a++a  +  +++
  Pavir.6NG051800.1.p  85 AVEGRGRRIRMPAMCAARLFQLTRELGHKTDGETIEWLLQQAEPAIIAATGTGTIPANFSsLAVSLRSGASHPSSASRAAAAFhHLPPPH 174
                          79*******************************************************999999999999999999955444444788888 PP

                  TCP 102 ksaasalnlak.esr......a 116
                          ++ a++l  ++ +++       
  Pavir.6NG051800.1.p 175 HEVAAMLGWNHgHHHqqqflpP 196
                          8888888888843333333330 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136921.92277133IPR017887Transcription factor TCP subgroup
PfamPF036342.6E-3188207IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MEAPSSSTST CTNSSRSASE KQHQCRQHHA VGQPHHPFYY AAAPGGGAAA TAIVQAPSAG  60
AGAGEVQLAQ AAPASGSSGG PEKKAVEGRG RRIRMPAMCA ARLFQLTREL GHKTDGETIE  120
WLLQQAEPAI IAATGTGTIP ANFSSLAVSL RSGASHPSSA SRAAAAFHHL PPPHHEVAAM  180
LGWNHGHHHQ QQFLPPSQQM QQHQAPRDPG AGEFMRKRYR DGADDLFKDA APRQNPTMAA  240
AGRARTVAMW AVAPPNSSAG GALCVQPARA FCAGAGAGTG TSKVQAPLQF MSTRSNNNNN  300
IPGGATMDAN IGMLAALNAG FQHQQQQEQE GQPPEMAGIY DRQRTTEEAG CRATGGEGWR  360
ECEGEGKGGS AAGWSAAEKA ASQAGKASAG RAGIWQASEH WAKR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.205604e-80stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG051800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0634321e-118BT063432.1 Zea mays full-length cDNA clone ZM_BFc0063A06 mRNA, complete cds.
GenBankKJ7268971e-118KJ726897.1 Zea mays clone pUT3442 TCP transcription factor (TCP2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827969.11e-124transcription factor PCF3-like
SwissprotQ53PH22e-70PCF3_ORYSJ; Transcription factor PCF3
TrEMBLA0A2S3ICT61e-122A0A2S3ICT6_9POAL; Uncharacterized protein
STRINGPavir.J20261.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49342652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.11e-34TCP family protein