PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.6NG049900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 325aa MW: 37829.6 Da PI: 6.5875 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 70.9 | 3.1e-22 | 23 | 116 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtf..vCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHn 86 +fYn YA e GFsvrk++ +++ ++e+t+r+f Cs eg+r+e++ + t+++r++ra tr+gC+a+l v++++ +g w+v+ ++ H+ Pavir.6NG049900.1.p 23 EFYNGYAFEKGFSVRKDRVRYKPSTKEVTWRRFlrLCSFEGYRDEKHFErTDQKRQPRALTRCGCNARLDVQRSEsSGIWYVAGFVDVHS 112 6********************************555********9998768999*******************999************** PP FAR1 87 Hela 90 H++a Pavir.6NG049900.1.p 113 HPFA 116 *986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.5E-20 | 23 | 116 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 3.2E-21 | 238 | 307 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 325 aa Download sequence Send to blast |
MDEIQEYNYV ANQNFNTEEE FFEFYNGYAF EKGFSVRKDR VRYKPSTKEV TWRRFLRLCS 60 FEGYRDEKHF ERTDQKRQPR ALTRCGCNAR LDVQRSESSG IWYVAGFVDV HSHPFAKPEH 120 AFVLRSHRGL NDPQKAEAVE LGLGGLRPYQ IMDVMATTHG GPGETGFISQ DLYNFFLRQK 180 KGKVQGNDAE FVMNHMRQMQ EKDPEIFYKY SLDAEGRLKN LFWSDAQSQM DYGIFGDVMV 240 FDSTYRVNRY NLPFVPFIGV NHHRSTVVFG CGILSDETIL SYVWLLEAFL EAMHQQHPRS 300 LITDGDSWYL LTQIDKSASA WISL* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.6NG049900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_022680951.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_022685196.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | K3YNE3 | 1e-178 | K3YNE3_SETIT; Uncharacterized protein | ||||
STRING | Si015784m | 1e-179 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38180.1 | 4e-59 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.6NG049900.1.p |