PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6NG032700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 249aa MW: 26830.5 Da PI: 5.6933 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.9 | 3.8e-08 | 81 | 129 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++ r + RRd++N++f eL + l + + K +Ka+iL A++ + +L Pavir.6NG032700.1.p 81 TSKACRGKMRRDKLNDRFIELGSTLEHG---KPVKADKAAILSDATRMVIQL 129 56777889*******************9...99*************988777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.93E-11 | 75 | 148 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.861 | 78 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.68E-6 | 79 | 134 | No hit | No description |
Pfam | PF00010 | 1.9E-5 | 82 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-5 | 84 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.1E-11 | 86 | 152 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MSLPPAPAES GGGGSPGDDW FLDCGILDDL PAAACGAFPW DASPSSSNPS VEVGSYVNTG 60 DVFKEPGSNK RLSSGSSGRP TSKACRGKMR RDKLNDRFIE LGSTLEHGKP VKADKAAILS 120 DATRMVIQLR SEAQQLKDTN GSLEEKIKEL KAEKDELCDE KQKLKLEKES LEHQMKLMTS 180 TPAYMPHPTL MPAPFPQAQL APFHPHAQAA GQKLMMPFVG YPGYPMWQFM PPSEVDTSKD 240 SEACPPVA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.5367 | 0.0 | callus| leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed throughout development, mostly in vasculatures. {ECO:0000269|PubMed:17028341}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6NG032700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025821110.1 | 1e-166 | transcription factor ILR3-like | ||||
Swissprot | Q9FH37 | 5e-67 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A2T7D388 | 1e-165 | A0A2T7D388_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3L6RLZ1 | 1e-165 | A0A3L6RLZ1_PANMI; Transcription factor ILR3 | ||||
STRING | Pavir.J34678.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2023 | 38 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51070.1 | 3e-47 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6NG032700.1.p |