PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6KG394600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 250aa MW: 26419.7 Da PI: 5.9661 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.5 | 5.5e-09 | 96 | 123 | 4 | 30 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C CS HLH 4 ahnerErrRRdriNsafeeLrellPk.a 30 +h e+Er+RRd++N f eLr +Pk + Pavir.6KG394600.1.p 96 SHVEAERQRRDKLNRLFCELRAAVPKvS 123 799**********************944 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.502 | 92 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.41E-12 | 93 | 149 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.0E-10 | 96 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.5E-6 | 96 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.69E-9 | 96 | 140 | No hit | No description |
SMART | SM00353 | 1.5E-6 | 98 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MDELVSSSSS LSTAPFSTRG HLPQDLELEF LCCNGLDQWM VSDEPLDLDG ATWGDDASGG 60 SASAGNNDLS GEPPPAAPKR RRGRKPGPRT NGPPISHVEA ERQRRDKLNR LFCELRAAVP 120 KVSLLADAAT YIAELRDRVE QLEAEAKQAA AATAVADTPA FGSGGGLEEK LEVRVVARDA 180 AALRLTSAAR HAPARLMNTL RSLDLPVQHA CVTRLGGVTV HDAVVDVPAG LQDESGLRAA 240 LVHKLQRSV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6KG394600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004974088.1 | 1e-105 | transcription factor bHLH14 | ||||
TrEMBL | A0A3L6PP84 | 1e-106 | A0A3L6PP84_PANMI; Transcription factor bHLH14-like | ||||
STRING | Si015343m | 1e-101 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP893 | 33 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32640.1 | 2e-16 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6KG394600.1.p |