PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6KG393900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 265aa MW: 28582.2 Da PI: 5.391 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.5 | 1.8e-11 | 105 | 150 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+ Rd++N +f eLr +P+ +++Ka+ L A YI +L Pavir.6KG393900.1.p 105 THVEAERQLRDKLNRRFCELRAAVPTV-----SRMDKASLLADAATYIAEL 150 799***********************6.....49**************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.53E-14 | 99 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.278 | 101 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.17E-11 | 104 | 155 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 8.1E-14 | 105 | 163 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.1E-9 | 105 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-9 | 107 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MQQHSDNSAM DELVRPAFSG SSPSPDTFFS TTGQHQELEF MPCDFPEVWL EDDDWIDGPP 60 DGISCGDEGS RSPGNDLLSG EPPAPAPKRR RGRKPGPRSN GPALTHVEAE RQLRDKLNRR 120 FCELRAAVPT VSRMDKASLL ADAATYIAEL RGRVKQLESE NRLAAAAAAA APVADTYSVG 180 VQENLEVRMV GTEAAALRLT TAARHAPARF MLALQWLDLP VQHACVCLVG GMTVQDAVVD 240 VPAAALRDER ALRAALLHRL QQTG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 1e-17 | 104 | 160 | 7 | 63 | Transcription factor MYC2 |
5gnj_B | 1e-17 | 104 | 160 | 7 | 63 | Transcription factor MYC2 |
5gnj_E | 1e-17 | 104 | 160 | 7 | 63 | Transcription factor MYC2 |
5gnj_F | 1e-17 | 104 | 160 | 7 | 63 | Transcription factor MYC2 |
5gnj_G | 1e-17 | 104 | 160 | 7 | 63 | Transcription factor MYC2 |
5gnj_I | 1e-17 | 104 | 160 | 7 | 63 | Transcription factor MYC2 |
5gnj_M | 1e-17 | 104 | 160 | 7 | 63 | Transcription factor MYC2 |
5gnj_N | 1e-17 | 104 | 160 | 7 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6KG393900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT040679 | 7e-90 | BT040679.1 Zea mays full-length cDNA clone ZM_BFc0116D15 mRNA, complete cds. | |||
GenBank | KJ726787 | 7e-90 | KJ726787.1 Zea mays clone pUT2108 bHLH transcription factor (bHLH145) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822542.1 | 1e-123 | transcription factor MYC3-like | ||||
TrEMBL | A0A3L6RG36 | 1e-122 | A0A3L6RG36_PANMI; Transcription factor MYC2-like | ||||
STRING | Pavir.Fa00117.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP893 | 33 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17880.1 | 1e-20 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6KG393900.1.p |