PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG393800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 284aa    MW: 30213.9 Da    PI: 6.5164
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG393800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.61.2e-09105150454
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          +h e+Er RRd++  +f  Lr  +P+      ++++K + L  A+ YI +L
  Pavir.6KG393800.1.p 105 SHMEAERHRRDKLHRRFCDLRAAVPNV-----TRMDKTSLLADATAYIAEL 150
                          899***********************8.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.268101150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.19E-7104155No hitNo description
SuperFamilySSF474593.79E-14104166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-7105150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-13105164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-8107156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MDEHGRPTSS TSSPPSPASF FSAASNGGVL EFPYTEVPEQ WLMDDDDSNV QEQRLLEHGA  60
VWGDDGALLS ARSADLSSRN PPAAAATKRG RKPPGPRAGG GPAVSHMEAE RHRRDKLHRR  120
FCDLRAAVPN VTRMDKTSLL ADATAYIAEL RARVEQLEAE ARRAAAARKA NRPFFVADAA  180
AAAAAAAAPA GSFDFELGEE EKLEVRMVVG REAAATLRLT TAARHGPARL MDALRSLDLP  240
VLHACACRVG GVTVQDAVVD VPAELRDADC LRAALLHRLQ ESG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A8e-15104160763Transcription factor MYC2
5gnj_B8e-15104160763Transcription factor MYC2
5gnj_E8e-15104160763Transcription factor MYC2
5gnj_F8e-15104160763Transcription factor MYC2
5gnj_G8e-15104160763Transcription factor MYC2
5gnj_I8e-15104160763Transcription factor MYC2
5gnj_M8e-15104160763Transcription factor MYC2
5gnj_N8e-15104160763Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG393800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282813e-46KJ728281.1 Zea mays clone pUT6560 bHLH transcription factor (bHLH8) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004974091.11e-111transcription factor bHLH14
TrEMBLA0A3L6PP101e-126A0A3L6PP10_PANMI; Transcription factor bHLH14-like
STRINGPavir.Fa00073.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.13e-14bHLH family protein