PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6KG391500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bZIP | ||||||||
Protein Properties | Length: 376aa MW: 39747.5 Da PI: 6.0522 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 26.9 | 1.1e-08 | 195 | 253 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 k+++r + NR +A rs +RK +i+eLe+kv+ ++ e +aL+ +l l+ a l++e+ Pavir.6KG391500.1.p 195 KKAKRIINNRQSAARSKERKMRYIAELERKVQFMQREATALATQLALLQRDTAGLTAEN 253 89**********************************************99999988887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.2E-14 | 191 | 255 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 1.6E-7 | 193 | 244 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.1E-7 | 193 | 249 | No hit | No description |
PROSITE profile | PS50217 | 10.634 | 193 | 256 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 5.7E-10 | 195 | 249 | No hit | No description |
CDD | cd14703 | 1.16E-21 | 196 | 247 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MNVDKTPIPG GGVGGGDAGG GGGGCAGNVP AMQSSCDAVA ASPAPRTECD ISRMPDSPMR 60 KPGHRRALSD IIGLPEDLDL GAPGAGDGPA LSDENEEELF SMFLDVEKLN SRCGASESES 120 SCAMAGVWGE ATQTSSAPGA GLRPKHHQRH SMDASSSIDT ENLFGTSAME GVSPAEAKKA 180 MSAAKLAELA LIDPKKAKRI INNRQSAARS KERKMRYIAE LERKVQFMQR EATALATQLA 240 LLQRDTAGLT AENSELKIRL QNTEQQVHLQ DALNEALKSE LQRLKMATGQ IGNGGGGAMN 300 FGTSPHPFGV SQQVFHPNQA MPPFVAMQQQ HPNQPLHPLQ TQQLQQAALN LNMNGPAPVP 360 NQWQWGDAWS ESSSS* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at high levels in levels in leaf sheath, moderate levels in leaf blade, but not in roots. Predominantly expressed in vascular tissues. {ECO:0000269|PubMed:14704272, ECO:0000269|PubMed:9311985}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:11390974, ECO:0000269|PubMed:12855676, ECO:0000269|PubMed:14704272, ECO:0000269|PubMed:9311985}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6KG391500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822526.1 | 0.0 | transcription factor RF2a-like | ||||
Swissprot | Q69IL4 | 1e-111 | RF2A_ORYSJ; Transcription factor RF2a | ||||
TrEMBL | A0A3L6RJ03 | 0.0 | A0A3L6RJ03_PANMI; Transcription factor RF2a-like | ||||
STRING | Pavir.Fa00247.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4269 | 38 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06070.1 | 5e-66 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6KG391500.1.p |
Publications ? help Back to Top | |||
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