PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG387200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 226aa    MW: 23489 Da    PI: 4.6463
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG387200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95.2e-184193155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                         + ++GVr++ + grWv+e+r+p   g +  r ++g+f+ta+ Aa+a++aa+++l g
  Pavir.6KG387200.1.p 41 PVFRGVRRRGRAGRWVCEVRVP---GsRGDRLWVGTFDTADAAARAHDAAMLALCG 93
                         579******************9...5445***********************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.9E-134193IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-1742103IPR016177DNA-binding domain
SMARTSM003801.9E-1942107IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-2742103IPR001471AP2/ERF domain
PROSITE profilePS5103220.40242101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MEHVKSAAEP PPEEGGRAGE SRPSPPKRPA GRTKFQETRH PVFRGVRRRG RAGRWVCEVR  60
VPGSRGDRLW VGTFDTADAA ARAHDAAMLA LCGADASLNF ADSAWLLDVP RAAGAPAELP  120
PLADVQRAAT EAVAGFLRRH GGDAPAGDAA APQHNAAWSS SPPPPPAGSV LDNGSLLELD  180
VFGGMDAGSY YASLAQGLLI DPPPTAADCP EDDEDCDAGE VELWS*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG387200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9582271e-133EU958227.1 Zea mays clone 1679636 dehydration-responsive element-binding protein 1B mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820831.11e-110dehydration-responsive element-binding protein 1J-like
SwissprotA2YXQ73e-64DRE1J_ORYSI; Dehydration-responsive element-binding protein 1J
SwissprotQ0J3Y72e-64DRE1J_ORYSJ; Dehydration-responsive element-binding protein 1J
TrEMBLA0A2T7DA991e-117A0A2T7DA99_9POAL; Uncharacterized protein
STRINGPavir.Fa00114.1.p1e-158(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.11e-17C-repeat/DRE binding factor 2