PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.6KG383500.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 304aa MW: 32563.3 Da PI: 6.6781

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.6KG383500.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.5	1.3e-09	142	189	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L+ l+P + +k Ka iL + ++Y++sLq Pavir.6KG383500.2.p 142 SHSLAERVRRERISERMRMLQALVPGC----DKVTGKALILDEIINYVQSLQ 189 8***********************9....555***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.18E-11	136	193	No hit	No description
SuperFamily	SSF47459	3.93E-17	136	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.542	138	188	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-16	138	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-6	142	189	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.9E-10	144	194	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MADFSSHHSL LLKMPAALTN GHSHNLSSLL FYGQNHGQGA TANANAASGT AAAMAEDASL 60 ESSSAVVDTS PQGSASPMDR KRKATEDSAT LSSAHSKDCN QEGKSKRGKR SNKEAEEKST 120 TDDEAPKGYI HVRARRGQAT DSHSLAERVR RERISERMRM LQALVPGCDK VTGKALILDE 180 IINYVQSLQN QVEFLSMRIA SMSPVLYGFG LDSDGLHDHA QKMGGMFQEA LAMPGPVLSQ 240 ASPAPSQAII ETTSTTPFSL QGQGAISFSQ DNGSTYLMQQ AVGEPTRQEL LNQLVFNNMC 300 SFQ*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.1998	0.0	leaf\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.6KG383500.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT035377	1e-174	BT035377.1 Zea mays full-length cDNA clone ZM_BFb0058D24 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025821629.1	0.0	transcription factor bHLH137-like isoform X1
Swissprot	Q93W88	1e-52	BH137_ARATH; Transcription factor bHLH137
TrEMBL	A0A2T7DA35	0.0	A0A2T7DA35_9POAL; Uncharacterized protein
STRING	Pavir.Fa00144.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	1e-42	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pavir.6KG383500.2.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]