PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6KG383500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 304aa MW: 32563.3 Da PI: 6.6781 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.5 | 1.3e-09 | 142 | 189 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L+ l+P + +k Ka iL + ++Y++sLq Pavir.6KG383500.1.p 142 SHSLAERVRRERISERMRMLQALVPGC----DKVTGKALILDEIINYVQSLQ 189 8*************************9....555*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.18E-11 | 136 | 193 | No hit | No description |
SuperFamily | SSF47459 | 3.93E-17 | 136 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.542 | 138 | 188 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-16 | 138 | 202 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-6 | 142 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.9E-10 | 144 | 194 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MADFSSHHSL LLKMPAALTN GHSHNLSSLL FYGQNHGQGA TANANAASGT AAAMAEDASL 60 ESSSAVVDTS PQGSASPMDR KRKATEDSAT LSSAHSKDCN QEGKSKRGKR SNKEAEEKST 120 TDDEAPKGYI HVRARRGQAT DSHSLAERVR RERISERMRM LQALVPGCDK VTGKALILDE 180 IINYVQSLQN QVEFLSMRIA SMSPVLYGFG LDSDGLHDHA QKMGGMFQEA LAMPGPVLSQ 240 ASPAPSQAII ETTSTTPFSL QGQGAISFSQ DNGSTYLMQQ AVGEPTRQEL LNQLVFNNMC 300 SFQ* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.1998 | 0.0 | leaf| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6KG383500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT035377 | 1e-174 | BT035377.1 Zea mays full-length cDNA clone ZM_BFb0058D24 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025821629.1 | 0.0 | transcription factor bHLH137-like isoform X1 | ||||
Swissprot | Q93W88 | 1e-52 | BH137_ARATH; Transcription factor bHLH137 | ||||
TrEMBL | A0A2T7DA35 | 0.0 | A0A2T7DA35_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Fa00144.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2358 | 37 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50915.2 | 1e-42 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6KG383500.1.p |
Publications ? help Back to Top | |||
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