PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6KG380000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 187aa MW: 21060.9 Da PI: 9.1402 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 75.6 | 3.9e-24 | 39 | 88 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rie+ + rqv fskRr g++ KA+ELSvLCda+v +i+fs+ g+ly ++s Pavir.6KG380000.1.p 39 RIEDRTSRQVRFSKRRSGLFNKAYELSVLCDARVGLIVFSPAGRLYQFAS 88 8***********************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.847 | 30 | 90 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.8E-31 | 30 | 89 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.19E-26 | 32 | 105 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.66E-33 | 32 | 100 | No hit | No description |
PRINTS | PR00404 | 1.6E-26 | 32 | 52 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.5E-25 | 39 | 86 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-26 | 52 | 67 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-26 | 67 | 88 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MEQAEGAATA RRAELQLLQQ LEKEESKGKR KRGRVELRRI EDRTSRQVRF SKRRSGLFNK 60 AYELSVLCDA RVGLIVFSPA GRLYQFASSG SSIEEIFGRY WDLANTINGL NIEARDSTVD 120 CNTQKEQQSS VSSLPDQLNI IAQWGMEANA EEMSMTEIRN LEETVTYALA AIRNKLRMKV 180 VGLPQT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 3e-16 | 32 | 89 | 3 | 60 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 3e-16 | 32 | 89 | 3 | 60 | Myocyte-specific enhancer factor 2B |
1tqe_R | 3e-16 | 32 | 89 | 3 | 60 | Myocyte-specific enhancer factor 2B |
1tqe_S | 3e-16 | 32 | 89 | 3 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_A | 3e-16 | 32 | 89 | 3 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_B | 3e-16 | 32 | 89 | 3 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_C | 3e-16 | 32 | 89 | 3 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_D | 3e-16 | 32 | 89 | 3 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_E | 3e-16 | 32 | 89 | 3 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_F | 3e-16 | 32 | 89 | 3 | 60 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.18053 | 6e-59 | leaf| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6KG380000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU943151 | 8e-64 | EU943151.1 Zea mays clone 1571160 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025820080.1 | 1e-103 | MADS-box transcription factor 51-like isoform X1 | ||||
Refseq | XP_025820081.1 | 1e-103 | MADS-box transcription factor 51-like isoform X1 | ||||
TrEMBL | A0A2T7D9Y5 | 1e-113 | A0A2T7D9Y5_9POAL; Uncharacterized protein | ||||
STRING | Si014540m | 2e-80 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11880.1 | 1e-24 | AGAMOUS-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6KG380000.1.p |