PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG373200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 399aa    MW: 42149.9 Da    PI: 5.5243
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG373200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.33.1e-09211258455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 
                          +h+ +Er RR+ri +++  L++l+P +     +K   Ka +L + ++Y++sLq
  Pavir.6KG373200.1.p 211 SHSLAERVRRERISQRMKVLQDLVPGC-----TKvIGKALMLDEIINYVQSLQ 258
                          8*************************9.....788*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.23E-16205272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.72E-10205262No hitNo description
PROSITE profilePS5088815.072207257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-15207270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-6211258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-9213263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MEGRAGGGDY IASLLSSAPR LDFGVLGSEP AAMLDGAAVA GGDGGEDCLE RFCGDPGFAE  60
RAARLSNFSG QRFAGAGAAA GLFGLPPPAP AASNGEFACS REASSVSDPA SAMKDANAKK  120
RKAPAASKGK GKEPSAQAGD QKDPDAKRLK TKGAEGKEES PVKPKSEQAG SDSSVEDGGQ  180
KPAGKGKNAK PVEPPKDYVH VRARRGQATD SHSLAERVRR ERISQRMKVL QDLVPGCTKV  240
IGKALMLDEI INYVQSLQRQ VEFLSMKLAT VNPLDFSNLP TLLQKDMFQA CGPSASSVFS  300
LESSSSGFPF SDQGDVFQSF VQNGLENQCG LNPLDLALSQ ATNAQYAFQD GTPSTNLQQR  360
NFWEDDLQSV FHIDNGQSQE ENGSFHGQLQ AGHMKMEF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.98900.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG373200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821024.10.0transcription factor bHLH78-like isoform X1
TrEMBLA0A3L6PMB30.0A0A3L6PMB3_PANMI; Transcription factor bHLH78-like
STRINGSi013867m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.14e-55bHLH family protein