PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG360500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 198aa    MW: 20390.1 Da    PI: 7.5062
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG360500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.24e-133482456
                  AP2  4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                         +GVr +k +grW+AeIr+p++   r + ++g+fg+   Aa a++aa  +++ge
  Pavir.6KG360500.1.p 34 TGVRPRK-SGRWAAEIRVPTT---REKLWIGTFGSDRLAALAYDAAVFCFYGE 82
                         69*9777.8*********976...49*********99**********999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.44E-133293IPR016177DNA-binding domain
PROSITE profilePS5103217.9653293IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-193293IPR001471AP2/ERF domain
SMARTSM003801.7E-183299IPR001471AP2/ERF domain
PfamPF008475.0E-83581IPR001471AP2/ERF domain
CDDcd000184.33E-183595No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MAALAPNGGG AAWSGGGGGQ PGVAFGRQKQ SEWTGVRPRK SGRWAAEIRV PTTREKLWIG  60
TFGSDRLAAL AYDAAVFCFY GEDLPKTRRF NFPVAPRPDV PKILRGHLSV ASVKSIAEYH  120
ARTVDALLPP VCDAAAALAA AAAAAGPPAG ATTALYHGAP TAMADNNLVV ASAVEDDQFS  180
FDPDVIAGLM GLVPGEY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG360500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276822e-40KJ727682.1 Zea mays clone pUT5610 AP2-EREBP transcription factor (EREB108) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822464.11e-100ethylene-responsive transcription factor ERF011-like
TrEMBLA0A3L6RGE51e-105A0A3L6RGE5_PANMI; Uncharacterized protein
STRINGPavir.Fb01907.1.p1e-107(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54442555
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.15e-17ERF family protein