PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6KG355400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 411aa MW: 43744.1 Da PI: 8.744 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 18.6 | 3.4e-06 | 320 | 345 | 6 | 30 |
HHHHHHHHHHHHHHHHHHHCTSCC.C CS HLH 6 nerErrRRdriNsafeeLrellPk.a 30 +++Er RR +i +++ +L+el+P+ + Pavir.6KG355400.1.p 320 SIAERVRRTKISERIRKLQELVPNmD 345 689********************955 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 9.95E-6 | 317 | 346 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.02E-4 | 318 | 348 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.8E-5 | 319 | 346 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 411 aa Download sequence Send to blast |
MYGSPVSKDL NLPVQPPMTS SGLQRYRSAP STLLGEVCED FLQPGPRAGS PDPGADNVFS 60 RFLADHQIRD KPPAPAPHAP AAAHFPDTAA MASQHQNQQQ QQQQQQQMMF HSQQQQMATV 120 ESGLYRTVSS GMEAPTAAVA GASSLIRQSS SPAGFLNHLN MDNGYGGMLR AGGMGVGFRN 180 GAASAAAAAD SPSGGGGGGR LKGQLSFSSR QGSLMSQISE MGSEELGGSS PEGAGGGRGY 240 IPGYPMSSGW EDSSSLMSES LSGMKRPRDS SEPGQSGLTQ QFSLPKTSSE MAAIEKFLQF 300 QDAVPCKIRA KRGCATHPRS IAERVRRTKI SERIRKLQEL VPNMDKETLG DRSVSVWFTN 360 PPCQLPCEES RTTPPELTGV LPIPCSKPTP QTCWIWPSTT SRISRSRSRC * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6KG355400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025804212.1 | 0.0 | transcription factor bHLH130-like | ||||
Refseq | XP_025804213.1 | 0.0 | transcription factor bHLH130-like | ||||
Refseq | XP_025821227.1 | 0.0 | transcription factor bHLH130-like | ||||
TrEMBL | A0A3L6QE40 | 0.0 | A0A3L6QE40_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Fa00493.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1884 | 38 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 4e-32 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6KG355400.1.p |