PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6KG350800.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 163aa MW: 18350.8 Da PI: 5.2985 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.4 | 2.9e-17 | 2 | 43 | 5 | 48 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +++E+ l++++++q+G++ W++Iar+++ gRt++++k++w++++ Pavir.6KG350800.2.p 2 SPQEERLIIELHAQWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 43 89****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 7.75E-13 | 1 | 43 | No hit | No description |
SMART | SM00717 | 3.9E-12 | 1 | 45 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 25.237 | 1 | 47 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.6E-15 | 2 | 42 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.8E-21 | 2 | 44 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.74E-13 | 2 | 51 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MSPQEERLII ELHAQWGNRW SRIARRLPGR TDNEIKNYWR THMRKKAQER KMSISPSSSS 60 SLTYQSCLID TSPIIGMGSG DTPNGSACVT STLESTQSSM DAYPMDQIWR EIEAPALLGT 120 AEGKEKTCSS IPCTLPSPAM WDYSCPEIFW KMEDEEIRML AL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.24640 | 0.0 | leaf| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6KG350800.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU652463 | 1e-124 | EU652463.1 Saccharum officinarum MYB protein (MYBAS1) mRNA, complete cds, alternatively spliced. | |||
GenBank | EU670236 | 1e-124 | EU670236.1 Saccharum officinarum MYB transcription factor MYBAS1 (MYBAS1) mRNA, complete cds, alternatively spliced. | |||
GenBank | HM136780 | 1e-124 | HM136780.1 Saccharum hybrid cultivar Co 740 MYB transcription factor variant 1 (MYBAS1) mRNA, complete cds, alternatively spliced. | |||
GenBank | HM136781 | 1e-124 | HM136781.1 Saccharum hybrid cultivar Co 740 MYB transcription factor variant 2 (MYBAS1) mRNA, complete cds. | |||
GenBank | HM136782 | 1e-124 | HM136782.1 Saccharum hybrid cultivar Co 740 MYB transcription factor variant 3 (MYBAS1) mRNA, complete cds, alternatively spliced. | |||
GenBank | KM387410 | 1e-124 | KM387410.1 Saccharum officinarum cultivar Badila R2R3-MYB transcription factor variant 1 mRNA, complete cds, alternatively spliced. | |||
GenBank | KM387411 | 1e-124 | KM387411.1 Saccharum officinarum cultivar Badila R2R3-MYB transcription factor variant 2 mRNA, complete cds, alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004980031.1 | 2e-97 | myb-related protein MYBAS1 | ||||
Swissprot | Q53NK6 | 1e-74 | MYBA1_ORYSJ; Myb-related protein MYBAS1 | ||||
TrEMBL | A0A3L6RGN4 | 7e-99 | A0A3L6RGN4_PANMI; Myb-related protein MYBAS1-like | ||||
STRING | Pavir.J33560.1.p | 1e-115 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.2 | 7e-34 | myb domain protein 48 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6KG350800.2.p |
Publications ? help Back to Top | |||
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