PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG337700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family M-type_MADS
Protein Properties Length: 352aa    MW: 38001.6 Da    PI: 4.3866
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG337700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.41.6e-271058250
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         rien++nrqvtfskRrng+ KKA+ELSvLCd++va+++fs++g+l  +s
  Pavir.6KG337700.1.p 10 RIENNTNRQVTFSKRRNGLVKKAYELSVLCDIDVALLMFSPSGRLSHFS 58
                         8********************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-36160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.198161IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.46E-29278IPR002100Transcription factor, MADS-box
CDDcd002652.77E-37275No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-24323IPR002100Transcription factor, MADS-box
PfamPF003199.6E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-243859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MGRVKLPIRR IENNTNRQVT FSKRRNGLVK KAYELSVLCD IDVALLMFSP SGRLSHFSGR  60
TGVEDVILRY MNLSDHDRGG CSAVQNPEYL VSMLQRLKRE GDMTTQLANP GALNERIEEI  120
QREIYSSQQQ LHIYEERLRL FEPDPAAFGS TREIDGCEKV LADLLARVVQ RKNYLLGDHM  180
TPFDPTASGM EGADGAQMYT GQAEGMGTFA GDAALWAAAG VGSDDPGHEM FGAADPLMYL  240
RDQDVYDATS RVAGLHGDPC AAAGEAEAEA EAWRQAYTCT ELLSTLIPAT PFPLMPHCLG  300
PDDEFLPLQD GGMAAAQEPV EASASCSYAP SDDAGTPATA YDSTVAPANV A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P7e-181101192Myocyte-specific enhancer factor 2B
1tqe_Q7e-181101192Myocyte-specific enhancer factor 2B
1tqe_R7e-181101192Myocyte-specific enhancer factor 2B
1tqe_S7e-181101192Myocyte-specific enhancer factor 2B
6c9l_A7e-181101192Myocyte-specific enhancer factor 2B
6c9l_B7e-181101192Myocyte-specific enhancer factor 2B
6c9l_C7e-181101192Myocyte-specific enhancer factor 2B
6c9l_D7e-181101192Myocyte-specific enhancer factor 2B
6c9l_E7e-181101192Myocyte-specific enhancer factor 2B
6c9l_F7e-181101192Myocyte-specific enhancer factor 2B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG337700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9751814e-55EU975181.1 Zea mays clone 483488 MADS-box protein AGL66 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973793.10.0agamous-like MADS-box protein AGL66 isoform X4
TrEMBLA0A3S6KAG00.0A0A3S6KAG0_BAMML; MADS62
STRINGSi013985m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49533360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.11e-70AGAMOUS-like 66