PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6KG337100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NF-YC | ||||||||
Protein Properties | Length: 170aa MW: 18487.2 Da PI: 5.2664 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 167.8 | 1.4e-52 | 30 | 133 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 ql+ fw++q +e +tdfknh+lPlarikki+kadedv+mi+aeaPv++++ace+filelt r w haeenkrrtl+ksdiaaav+rt+ Pavir.6KG337100.1.p 30 QLNLFWAEQfreVEATTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHRGWAHAEENKRRTLQKSDIAAAVARTE 119 7999****998899**************************************************************************** PP NF-YC 88 ifdflvdivprdel 101 +fdflvdivprde Pavir.6KG337100.1.p 120 VFDFLVDIVPRDEA 133 ************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 5.03E-30 | 39 | 124 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.4E-21 | 52 | 115 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 6.6E-37 | 53 | 130 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MEPKSTTPLP APVMGAPVAY PPPPAAAYQQ LNLFWAEQFR EVEATTDFKN HNLPLARIKK 60 IMKADEDVRM IAAEAPVVFA RACEMFILEL THRGWAHAEE NKRRTLQKSD IAAAVARTEV 120 FDFLVDIVPR DEAKDAEAAA AAGMGAGIPH PAAGMPAADP MGYYYVQPQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 5e-56 | 38 | 130 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 102 | 108 | RRTLQKS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6KG337100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU974115 | 1e-164 | EU974115.1 Zea mays clone 440194 nuclear transcription factor Y subunit C-2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001152176.1 | 4e-88 | uncharacterized protein LOC100285814 | ||||
Swissprot | Q9XE33 | 1e-77 | NFYC6_ORYSJ; Nuclear transcription factor Y subunit C-6 | ||||
TrEMBL | B6UA50 | 8e-87 | B6UA50_MAIZE; Nuclear transcription factor Y subunit C-2 | ||||
STRING | GRMZM2G113127_P01 | 1e-87 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3856 | 36 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 7e-60 | nuclear factor Y, subunit C2 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6KG337100.1.p |
Publications ? help Back to Top | |||
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