PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG320000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 372aa    MW: 38856.2 Da    PI: 6.7417
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG320000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.72.4e-09199246455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Pavir.6KG320000.1.p 199 RHSLAERLRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 246
                          599***********************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.41E-17192262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.48E-11193250No hitNo description
PROSITE profilePS5088815.478195245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-16198261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-6199246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-11201251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MDSFAWAAVS QTPGLAGGGA AGSDGQGGGF LPSMAGFHLP PPACLEHFSV DSGLVERAGR  60
SPCFGAANGT ATTASASNIT LEGASAHRSK VAGGSSSVSG VHDEAGTGDC SSGGPEPDYK  120
NMNGSNEDVL GTDRAKASNA STDSANESSR SKGVKGEENG LAAATGVAGK RKRNGSKAPD  180
EEGEGYIHVR ARKGQATNRH SLAERLRREK ISERMKLLQD LVPGCSKVTG KAVMLDEIIN  240
YVQSLQRQVE FLSMKLAAVN PQLGLNIEGI LSKDLIRFPG APPSAPLGFS LSQSGMVQEG  300
VHGLASSNGF RTVMQEQLNE RDSFRQHVSQ SLEQMPRAMD GWFHNAGQIG YRAVINPEHL  360
SISPDQDGFH L*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.74210.0callus| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG320000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821587.10.0transcription factor bHLH49-like
TrEMBLA0A3L6PPS30.0A0A3L6PPS3_PANMI; Transcription factor bHLH49-like isoform X2
STRINGPavir.Fa00598.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29093785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.37e-53bHLH family protein