PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG318900.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 390aa    MW: 42671.5 Da    PI: 12.5362
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG318900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.51.3e-14134185155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++Y+k+L+
  Pavir.6KG318900.2.p 134 QRMTHIAVERNRRKQMNEYLAALRSLMPPS---YVQRGDQASIIGGAINYVKELE 185
                          79****************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.36E-15132189No hitNo description
Gene3DG3DSA:4.10.280.101.3E-14132189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.31133184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-18133207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-12134185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-12139190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MALEAVVFSE ELFGSWAMAA APGGGGWSWG DQGENEHGGA VERVMDLEGG AAAYWEVGAN  60
SSALMMQGAD HQEPDGISLS APPLPENGGG GGNNAAAAGG AGFSQEVAVP PPPAGRRKRR  120
RTRSVKNREE VESQRMTHIA VERNRRKQMN EYLAALRSLM PPSYVQRGDQ ASIIGGAINY  180
VKELEQLLQS LEARKPRPPP GPVPRRRRLR RRRRGGALRG LLHLPAALHE RRRRPLPRHR  240
ERATRRRRGT EQRRRGRRQQ RRRRRRRRLG LAAVVGGGRG GDHGGEPREP EAAVPAAPAA  300
AAAPCRRAAG PPPHRAAPQR HQRRPPHGPL LPQPQGGRRL RALVGGRHRG GGPRHRGGGR  360
PRGGRRRAAA RRIAGRRRRR MTQQTVHPL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116120RKRRR
2116121RKRRRT
3134145RMTHIAVERNRR
4252268RRRGRRQQRRRRRRRRL
5253268RRGRRQQRRRRRRRRL
6256263RRQQRRRR
7257266RQQRRRRRRR
8259265QRRRRRR
9260267RRRRRRRR
10261267RRRRRRR
11344351GGRHRGGG
12364379RRRAAARRIAGRRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG318900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1076266e-88AK107626.1 Oryza sativa Japonica Group cDNA clone:002-131-D10, full insert sequence.
GenBankHQ8588616e-88HQ858861.1 Oryza sativa Japonica Group isolate UT1670 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973718.13e-63transcription factor bHLH94
TrEMBLA0A3L6RF593e-80A0A3L6RF59_PANMI; Transcription factor bHLH94-like
STRINGPavir.J22933.1.p1e-134(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.15e-33bHLH family protein